Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_F21
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 31 0.11
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 31 0.11
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|... 27 1.8
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 4.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 26 5.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 39 CTLISIHYRI-SVIMIWKTLIFAFLTIGVLAQDY 137
CT+ S+ + + S+I+ W LIF F+TIG+ A D+
Sbjct: 102 CTINSLRFPVLSIIVGW--LIFLFITIGISASDF 133
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 334 YSKNTVQS-HRN*IAASIHFW--TVSHRAWTR-THAAIS--LQSRTVPTSSSTSYATKME 495
Y+ N+ S H S W + S +AW R T ++S ++S+T+P STSY ++E
Sbjct: 18 YNGNSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE 77
Query: 496 TESLCSSLR 522
E+ C R
Sbjct: 78 -EAFCRDFR 85
>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 477 ICYKDGDRIALFIAESGPECLQEKADSIKTCFTKLKDSF 593
+CY+ D + IA +GP+ ++ + D T++ DSF
Sbjct: 11 VCYQPEDTTFIIIASNGPDVMRWRKDK-TVPLTEIVDSF 48
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 394 TVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETES--LCSSLRAVLSACKRRLIQSRL 567
T+S ++ T A+ + S P+SSST+ ++ + S + SS+ + +S+ + S
Sbjct: 128 TISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSS 187
Query: 568 VSLS*KTASLTLKPLT 615
S S +S K ++
Sbjct: 188 ASSSGSISSADAKTVS 203
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 333 VFKKYCAKSPQLNSCINSLLDGVSPCVDPNARGHLASVKNSTNQL 467
V K +PQL+ + +LL+ +SP D + ++ +K++T+++
Sbjct: 103 VDKSLLGPTPQLSRRVLNLLEDMSPIADSHV-DQISDIKHNTSEI 146
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 445 SRTVPTSSSTSYATKMETESLCSSLRAVLS 534
S +VP+SSS+ +++ M T L SS V S
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSS 176
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 445 SRTVPTSSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTGFL 624
S PTS+S+SY + + S+ SS + S+ L S L + S + S + + L
Sbjct: 198 SSAAPTSTSSSY---LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254
Query: 625 PPKSAANTMS 654
S+++T S
Sbjct: 255 SSSSSSSTAS 264
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 203 TIFFALVCEHLF*LFPLIF 147
T+F+AL+ +HL + P+I+
Sbjct: 85 TLFYALISQHLIEMIPIIY 103
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 463 SSSTSYATKMETESLCSSLRAVLSACKRRLIQSRLVSLS*KTASLTLKPLTGFLPPKS 636
SS SYA + S+ S C R L ++ SL + L + LPPKS
Sbjct: 150 SSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 147 EDKREQLKQMLTDQCKKYGA--EDKVATVDAA-GRAFVECVKELVDVNQLKNEIEEAKPN 317
E +R+ LKQ + + E ++ +++++ + ECV +N+L ++I+E K
Sbjct: 543 ELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLK 602
Query: 318 GALDEVFKKY 347
L+E KKY
Sbjct: 603 --LNEANKKY 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,245
Number of Sequences: 5004
Number of extensions: 44294
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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