Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F21
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    30   1.4  
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    29   3.2  
02_03_0134 - 15596379-15597689                                         29   3.2  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   5.6  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   7.5  

>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +3

Query: 114 IGVLAQDYQLPEDKREQLKQMLTDQCKKYGAEDKVATVDAAGRAFVECVKELVDVNQLKN 293
           +  ++ + + P +    + QML D       +D V T  A+G+A V  + E++D  ++++
Sbjct: 443 LATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIES 502

Query: 294 -EIE-EAKP---NGALDEVFKKYCAKSPQ 365
            ++E E  P       D++   +C K+ +
Sbjct: 503 GKLELETVPFDLRTVCDDILSLFCGKAQE 531


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -3

Query: 98  YQSLP---DHDDTNTIVNTNEGTNA 33
           +QSLP   D+D  NT++N N GT+A
Sbjct: 604 FQSLPETPDNDTCNTVINENPGTSA 628


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 147 EDKREQLKQMLTDQCKKYGAEDKVATVDAAG---RAFVECVKELVDVNQLKNEIEEAKPN 317
           EDK E++ ++++++  +    +     D A     + V+ VKE +D ++LK    E +  
Sbjct: 277 EDKNEEVVELISEEKHQVPDNNSFNGRDNADIGINSKVQAVKEAIDNSELKEAANETELK 336

Query: 318 GALDEVFKKYCAKSPQLNSCINS 386
            A+DE          +L   +N+
Sbjct: 337 EAVDETELNEVVSESELYKDVNT 359


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 382 IHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 507
           +HFW +   +   T+A + L S  VP S  T YA  + T +L
Sbjct: 709 LHFWVILFASLITTNAYVMLVSALVP-SYITGYAVVIATTAL 749


>07_03_0918 -
           22581625-22581687,22581773-22581868,22581980-22582268,
           22582341-22582477,22582567-22582683,22583277-22583440,
           22583542-22583756,22583838-22584004,22584206-22584559,
           22584647-22584795,22584907-22585030,22585132-22585371,
           22585723-22586140,22586297-22586920,22586999-22587183,
           22587302-22587412,22587583-22587789,22587869-22587967,
           22588063-22588159,22588296-22588384,22588495-22588548,
           22588671-22588793,22588872-22588940,22589020-22589089,
           22589202-22589260,22589367-22589570,22590032-22590060,
           22590375-22590433,22590513-22590634,22591637-22591830,
           22591974-22592088
          Length = 1680

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
 Frame = +3

Query: 216 VATVDAAGRAFVECVKELVDVNQLKNEIEEAKPNGALDEVFKKYCAKSPQL--NSCINSL 389
           V ++  +G  F   ++E +   +L  E +  K +  +++  ++YCA +P L  N+    +
Sbjct: 589 VDSMKFSGLKFDAAIREFLKGFRLPGEAQ--KIDRIMEKFAERYCADNPGLFKNADTAYV 646

Query: 390 LDGVSPCVDPNARGHLASVKNSTNQLVDFICYKDGDRIALFIAESGPECLQEKADSIKTC 569
           L      ++ +A   +   K S +  V      D +  A        E L+E  DSI   
Sbjct: 647 LAYAVIMLNTDAHNPMVWPKMSKSDFVRMNTASDAEECA------PKELLEEIYDSIVQE 700

Query: 570 FTKLKDSFPNA 602
             K+KD FP++
Sbjct: 701 EIKMKDDFPDS 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,977
Number of Sequences: 37544
Number of extensions: 288570
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)