Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F20
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   3.8  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   5.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   5.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.8  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   8.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.8  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 189  LNVIIKNIATFIRNLISICGINRMDFLRFM 100
            LNV++ +++ FIRN +   G+  MDF+R++
Sbjct: 930  LNVLMISLSKFIRNSLRNSGL--MDFVRYL 957


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 399 RDI*ESPTKYTIIYQ 355
           RDI ESP KY++IY+
Sbjct: 619 RDIIESPVKYSLIYK 633


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -3

Query: 347 ELHVIFDSTDYIDTASKLGGPLHIAETLESTASQTASLVQ*KVP 216
           E H++   T +ID  +    PLH   + +S A ++++  +  +P
Sbjct: 6   ENHLLGPKTSFIDNRTSTSRPLHEIPSYQSLARRSSTWKRANIP 49


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 428 LRIKP*AGSQEIYESHPQNILSSTNI*ELHVIFDSTDYIDTASKLGG 288
           + +K    +Q  Y+S P+N  +     + HV FDS   +   S++ G
Sbjct: 242 MEVKGRVCTQNEYKSDPKNQYNILGAPKPHVFFDSNSQLVVDSRVAG 288


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 251  KQSILVFLLCEGAHPVC*PCLCSQCYQRSR 340
            KQ ++   LC+    +  PCL SQC   SR
Sbjct: 2269 KQILIPQTLCDKIEQIL-PCLASQCSMLSR 2297


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 177 IKNIATFIRNLISICGINRM 118
           IKN  TF++ + S+ G+N++
Sbjct: 209 IKNTLTFVKQVYSLLGMNKL 228


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 254 QSILVFLLCEGAHPVC*PCLCSQCYQRSRVTPKCW*MIVYFVGDSHISLVT 406
           Q +L    C  A  +C P LC + Y   R    C  +++Y +G + ++ VT
Sbjct: 461 QYVLSNCHCLSAFYLCMPSLCQKSYGTER-RYLCPPIVLYLLGTTWLNNVT 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,334
Number of Sequences: 5004
Number of extensions: 35175
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)