Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F20
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763...    28   3.8  

>12_01_0826 -
           7629892-7629964,7630052-7630135,7630216-7630314,
           7630391-7630449,7630804-7630888,7630961-7631058,
           7631209-7631355,7631433-7631525,7631642-7631770,
           7631859-7631912,7632133-7632309,7632396-7632481,
           7634234-7634324,7634433-7634531,7634618-7634694,
           7634784-7634952,7639551-7639642,7639712-7639825,
           7640933-7641038,7641133-7641183,7641315-7641416,
           7642581-7642655,7642768-7642965,7642998-7643123
          Length = 827

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 308 TASKLGGPLHIAETLESTASQTASLVQ 228
           TA+K+G  L  AE+   TASQT  L++
Sbjct: 158 TAAKIGDHLQSAESQRETASQTIDLIK 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,670
Number of Sequences: 37544
Number of extensions: 194548
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)