Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F18
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   3.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.6  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 313 LKEVSQIPDQALPQEKQSSGLAPSGG 390
           L+E    PD+ LP ++++  L+P  G
Sbjct: 180 LREERCDPDRPLPLDQKARDLSPRNG 205


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -3

Query: 257 DCPGYLFCLQL*HVLSSISQSCQHPGCYP-QQGVCS 153
           DC  Y  C+     L SI + C H   Y  +  +C+
Sbjct: 454 DCSVYYTCVSDGSKLVSIQRKCNHGLVYDLELNICN 489


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 169 SRVCAVNGKFKANLPLGTFAANFAT 95
           +R+ A  G+     P+GT A  F+T
Sbjct: 211 TRLSATKGRLVITEPVGTKAPAFST 235


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 212  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 310
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 212  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 310
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 212  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 310
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 212  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 310
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 422 SSEAHMSHVQKPPLGASPEDCF 357
           SSE     V+K P  AS  +CF
Sbjct: 160 SSERDYFSVKKLPSPASDSECF 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,108
Number of Sequences: 336
Number of extensions: 2104
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)