Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F17
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z92972-4|CAB07489.2|  337|Caenorhabditis elegans Hypothetical
           protein T19C9.4 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 211 LYIIVFPPFLVFLCKVMSTDSFEYVFL*NIIPKTHLQLQNIAGLISNFPFR 363
           L++I+ P   V L     T   E++ L N+   TH   ++I+ ++ + P+R
Sbjct: 265 LFVIIAPAMAVLLASWTGTYRQEWMNLSNVCIATHGLAESISIMLVHKPYR 315


>Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 22  QEYCSSQLLIIQNGSRQFLFVLLF 93
           ++YCSS+L+  ++GSR+FL +  F
Sbjct: 326 KDYCSSKLVGPESGSRRFLSLPTF 349


>Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 22  QEYCSSQLLIIQNGSRQFLFVLLF 93
           ++YCSS+L+  ++GSR+FL +  F
Sbjct: 326 KDYCSSKLVGPESGSRRFLSLPTF 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,679
Number of Sequences: 27780
Number of extensions: 188370
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)