Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F15
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.5  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   4.5  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   4.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.8  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   7.8  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 192 FKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPE 308
           F D  ++   Y A+YL+ I   +++ +  PG  +P  PE
Sbjct: 334 FDDLLESHVCYFADYLQIIVCDEILKNWSPGLEKPAKPE 372


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 201 FSKAMTDYIAEYLENIRDRQ--VVPSVKPGYLRPLVPEQAPEQPEPWT 338
           FS A T    E   ++R R   VVPSV      P  P+   EQ  PWT
Sbjct: 9   FSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKAPKHIQEQ--PWT 54


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   RTAILKRSRFQFESRVIKYNTDLNN 81
           R+ IL R   +FE  + KYN +L N
Sbjct: 49  RSPILTRQPSEFEKSIYKYNAELWN 73


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -2

Query: 410  GVXLR*LPMS-DTGHYDAFDICHHSRPRF 327
            G  LR LP +   GH DA   C H  P F
Sbjct: 1301 GKPLRALPFTIQIGHIDAITYCLHRSPSF 1329


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 168 LVRVDI*IKHLCLIMCQHTCKCNRLER 88
           L R+D  I  L  I+CQHT  C  L++
Sbjct: 212 LERMDSSITGLITIVCQHTFHCPCLQK 238


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 KDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPE 329
           K+ + +  D +AEY   +   ++  S    + RP +P   PE+ +
Sbjct: 53  KEKTSSFEDELAEYASQLDQDEIKSSKDQQWQRPALPAINPEKDD 97


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 365 DAFDICHHSRPRFWLFWSLFWYQ 297
           D   I    +P+F + WS +WYQ
Sbjct: 136 DIISIFPLHQPKFDIKWSKYWYQ 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,891
Number of Sequences: 5004
Number of extensions: 31352
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)