Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_F15
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0855 - 32494491-32496092 79 2e-15
05_06_0036 - 25090942-25092639 73 1e-13
10_07_0115 - 13008835-13008877,13009117-13010621 72 2e-13
10_07_0005 - 11744073-11745653 71 4e-13
08_01_0277 - 2262557-2264128 71 5e-13
08_01_0275 + 2249794-2251338 71 6e-13
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179... 41 6e-04
09_04_0418 - 17406313-17407419 30 1.1
01_05_0314 - 20779862-20780286,20780734-20781286 29 1.4
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 29 1.9
10_08_0295 - 16581014-16583071 27 5.8
03_05_0275 + 22628452-22628694,22630181-22630386,22631368-226316... 27 7.7
>01_06_0855 - 32494491-32496092
Length = 533
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = +3
Query: 177 MEVGDFKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPEP--WTAVMA 350
++ +F+ + D+IA+Y + D V PSV PG+LR +P AP +PEP + A +
Sbjct: 39 LDADEFRRLGHQVVDFIADYYAGLGDYPVHPSVTPGFLRRQLPADAPSRPEPEAFAAALR 98
Query: 351 DIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
D+ +++ GVTHWQSP+ A FP ++S + + L
Sbjct: 99 DVRDLILPGVTHWQSPRHFAHFPASSSTVGALGEAL 134
>05_06_0036 - 25090942-25092639
Length = 565
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 177 MEVGDFKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPEP--WTAVMA 350
++ G+F+ + + D+IA+Y I D V P+V PG+L +P AP PEP TA +
Sbjct: 25 LDAGEFRRQGRQVVDFIADYYAGINDYPVRPAVAPGFLAGKLPATAPSTPEPDALTAGLR 84
Query: 351 DIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
D+ +++ G+THWQSP+ A F S + + L
Sbjct: 85 DVRELMLPGLTHWQSPRHFAHFSATASNVGALGEAL 120
>10_07_0115 - 13008835-13008877,13009117-13010621
Length = 515
Score = 72.1 bits (169), Expect = 2e-13
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +3
Query: 156 PHEPTETMEVGDFKDFSKAMTDYIAEYLENIRDRQV-VPSVKPGYLRPLVPEQAPEQPEP 332
P + + ++ F S A+ D++A Y ++ V ++PG LR L+PE APE EP
Sbjct: 5 PLDALQPLDPDTFAADSSAVVDFLAGYYRDVDKYPVRAADLEPGRLRRLLPEAAPEFGEP 64
Query: 333 WTAVMADIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
++AD+ R V+ G+THWQSP A FP S +ML
Sbjct: 65 AERILADVRRDVLPGLTHWQSPSFFAYFPMNASAAGFAGEML 106
>10_07_0005 - 11744073-11745653
Length = 526
Score = 71.3 bits (167), Expect = 4e-13
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +3
Query: 177 MEVGDFKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPEP--WTAVMA 350
++ +F+ + + D IA+Y + + V P+V PG+LR +P + P + EP + A M
Sbjct: 34 LDADEFRRQGRLVVDLIADYYAGMGEYPVHPTVSPGFLRHRLPAEPPSRREPDAFAAAMQ 93
Query: 351 DIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
D+ V++ G+THWQSP+ A FP ++S + + L
Sbjct: 94 DVRDVILPGLTHWQSPRHFAHFPASSSTAGALGEAL 129
>08_01_0277 - 2262557-2264128
Length = 523
Score = 70.9 bits (166), Expect = 5e-13
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +3
Query: 162 EPTETMEVGDFKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPEPWTA 341
EP ++ D + + D++ +Y +++ V+P V+PGYL L+ P P+
Sbjct: 20 EPFRPLDADDVRSYLHKAVDFVYDYYKSVESLPVLPGVEPGYLLRLLQSAPPSSSAPFDI 79
Query: 342 VMADIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
M ++ V+ G+THW SP A FP S AI +++
Sbjct: 80 AMKELREAVVPGMTHWASPNFFAFFPATNSAAAIAGELI 118
>08_01_0275 + 2249794-2251338
Length = 514
Score = 70.5 bits (165), Expect = 6e-13
Identities = 30/99 (30%), Positives = 52/99 (52%)
Frame = +3
Query: 162 EPTETMEVGDFKDFSKAMTDYIAEYLENIRDRQVVPSVKPGYLRPLVPEQAPEQPEPWTA 341
E + + D + + D+I++Y +++ V+P+VKPGYL+ + P P+
Sbjct: 20 ETFQPLNADDVRSYLHKAVDFISDYYKSVESMPVLPNVKPGYLQDELRASPPTYSAPFDV 79
Query: 342 VMADIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
M ++ V+ G+THW SP A FP+ S AI D++
Sbjct: 80 TMKELRSSVVPGMTHWASPNFFAFFPSTNSAAAIAGDLI 118
>07_03_0164 +
14616156-14616225,14616409-14616477,14617672-14617902,
14618394-14618557,14618795-14618935,14619632-14619691,
14620358-14620522,14620676-14620732,14621084-14621148,
14622235-14622358,14622469-14622606,14622705-14622830
Length = 469
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 342 VMADIERVVMSGVTHWQSPKXHA*FPTATSYPAIVADML 458
++ADI++ ++ GVTHWQSP A +P+ +S + +ML
Sbjct: 44 LVADIQQKIIPGVTHWQSPNYFAYYPSNSSTAGFLGEML 82
>09_04_0418 - 17406313-17407419
Length = 368
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 288 LRPLVPEQAPEQPEPWTAVMADIERVVMSG 377
LR +V P+ EPW A D RVV++G
Sbjct: 181 LRAVVAACRPDGAEPWLAAHGDASRVVLAG 210
>01_05_0314 - 20779862-20780286,20780734-20781286
Length = 325
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 207 KAMTDYIAEY--LENIRDRQVVPSVKPGYLRPLVPEQAPEQPEPWTAVMADI-ERVVMSG 377
KA D + E ++NIRD+ PS PL P P +P+P + ++ E+ +++
Sbjct: 122 KARLDIMHEISRVQNIRDKYRHPSSPATATAPLAPADVPNKPKPKPKDLKELKEQYLLAH 181
Query: 378 VT--HWQ 392
+ HW+
Sbjct: 182 LVAGHWR 188
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 120 DTLLNISV*FKYPHEPTETMEVGDFKDFSKAMTDYIAEYLENIR 251
DT + S F + HEPT+T+E D + + ++ I++ L IR
Sbjct: 481 DTPKSRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIR 524
>10_08_0295 - 16581014-16583071
Length = 685
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 335 DGCDGRYRTRRNVRC 379
DGC GR RTR + RC
Sbjct: 357 DGCQGRSRTRHSSRC 371
>03_05_0275 +
22628452-22628694,22630181-22630386,22631368-22631659,
22632707-22632814,22632972-22633222,22633316-22633357,
22634478-22634601,22634786-22634851,22635734-22635910
Length = 502
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 285 YLRPLVPEQAPEQPEPWTAVMADIERVVMSGVTHWQSPKXHA*FP 419
YLR L PE+ E E + + + V+ G+ SPK H+ P
Sbjct: 275 YLRSLTPEKVAELSESTSPGVQEAIHSVVHGLLATLSPKIHSKAP 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,491
Number of Sequences: 37544
Number of extensions: 189515
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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