Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F14
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         28   3.4  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   4.5  
06_01_0825 + 6233525-6233740,6234274-6234461,6234544-6234668,623...    27   5.9  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   7.8  
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789...    27   7.8  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 123 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLF 4
           HS    I + S + RL AHP   P +RLIL+  D +  LF
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLF 166


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 79  AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 252
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>06_01_0825 +
           6233525-6233740,6234274-6234461,6234544-6234668,
           6234858-6234917,6235043-6235074
          Length = 206

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 286 GDKMTAAGXVNLFHNNNHDFSAKAFATNNMP 378
           GD    A  VNL H N  DF+A  F  +  P
Sbjct: 73  GDDAILARAVNLLHANKEDFAAVLFYASWCP 103


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 82  GALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 252
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


>02_05_0792 -
           31777775-31778220,31778506-31778630,31778724-31778911,
           31779716-31779892
          Length = 311

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 286 GDKMTAAGXVNLFHNNNHDFSAKAFATNNMPNIPQV-PNF 402
           GD++T A  + L H N  D+ A  F  +  P   +  PNF
Sbjct: 60  GDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNF 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,213,749
Number of Sequences: 37544
Number of extensions: 222041
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)