Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F14
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    27   5.4  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    26   9.4  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    26   9.4  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    26   9.4  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    26   9.4  

>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 176 EPRALSLWFSLPVMGTLTIAPEVPSELI 93
           +P  +  W+S   MG+LTIA ++P+  I
Sbjct: 57  KPDGVETWYSKEFMGSLTIASQLPNASI 84


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 117 TGGTIRVDSESTRLPAHPRVSPLLRLILILF 25
           TGG  + DS  T LP H  +S L+ LI +++
Sbjct: 301 TGGVTKDDSFVTPLPVHSLISLLIWLICLVY 331


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
            B0416.1 protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 162  ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 28
            + V  + S   +DHSTG     DSEST     P++S   R ++ +
Sbjct: 876  QFVPSLGSVSEVDHSTGEEQSSDSESTTSSLPPKLSLRQRFLVCI 920


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +1

Query: 268 THIP----GFGDKMTAAGXVNLFHNNN 336
           +H+P    GFGDK T +  +  F+NNN
Sbjct: 237 SHLPDPRLGFGDKTTGSDSLQKFYNNN 263


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 378 WHVISGECFGTEI 340
           WHVI G+CFG+ +
Sbjct: 54  WHVICGKCFGSRV 66


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 184 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 285
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 197 IWLVRSTEPRALSLWFSLPVMGTLTIA 117
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 43  PEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAG 222
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 68  PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 127

Query: 223 LAYDNVNG 246
           L YD + G
Sbjct: 128 LPYDPMTG 135


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 43  PEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAG 222
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325

Query: 223 LAYDNVNG 246
           L YD + G
Sbjct: 326 LPYDPMTG 333


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 43  PEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAG 222
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 334 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 393

Query: 223 LAYDNVNG 246
           L YD + G
Sbjct: 394 LPYDPMTG 401


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 43  PEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAG 222
           P + A++ VRR     +     TS  M  +P +         LGS+  + +  L  ++A 
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325

Query: 223 LAYDNVNG 246
           L YD + G
Sbjct: 326 LPYDPMTG 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,311,254
Number of Sequences: 27780
Number of extensions: 180202
Number of successful extensions: 282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)