Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F13
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   223   7e-60
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   1.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   3.8  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    25   5.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   5.0  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   6.6  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   6.6  
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    24   8.7  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  223 bits (546), Expect = 7e-60
 Identities = 99/142 (69%), Positives = 126/142 (88%)
 Frame = +2

Query: 2   FTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMVLLCGEITSKANVDY 181
           FTSESVGEGHPDK+CDQISDAILDA LK DP +KVACET +KTGMV++ GEIT+++ +DY
Sbjct: 7   FTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDY 66

Query: 182 QKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQSPNIAEGVYQDREEIDIGAGDQGLMF 361
           QKV+R T+K IGYDDS KGFD++T N+LVAIE+QSP+IA+G++ ++   ++GAGDQG+MF
Sbjct: 67  QKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGIMF 126

Query: 362 GYATDETEECMPLTVVLAHKLN 427
           GYATDET E +PLT++LAHKLN
Sbjct: 127 GYATDETPEKLPLTILLAHKLN 148


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 412 EYYCQRHAFFCFVSRISEH*SLISGPNIYFL-SVLIHPF 299
           EY  +R  F  ++S+   + SLI   N++F  SVL H F
Sbjct: 279 EYMLKRRVFTNWMSKRRRNESLIQKANVFFQHSVLAHSF 317


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 211 VFHCFSHNFLIVNISFRCDLAAKQYHSGFCNSFTSDFSIRILF 83
           ++    H F   NI      +A++Y     + F SDF +R+ +
Sbjct: 344 IYRTSKHEFYDYNIILFFQNSAREYMFSLTDFFYSDFELRVSY 386


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 233 KGFDWRTLNLLVAIEEQSPNIAEGVYQDREEIDIGAGDQGLMF 361
           KG ++ T  L++A    +P   EG+Y D  E D G  D  + F
Sbjct: 10  KGCEYLTHRLVLATLSGTPIRVEGIYPD--EADPGVKDYQVSF 50


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 199 FSHNFLIVNISFRCDLAAKQYHSGFCNSFTSDFS 98
           F  +FL +  SF C L +  YH  F ++F  + S
Sbjct: 463 FHEDFLRLQNSFNCLLDSGLYHQVFTSTFAQNES 496


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 275 EEQSPNIAEGVYQDREEIDIGAG 343
           E+  P++  GV +DR  + IGAG
Sbjct: 354 EDYLPSLLTGVTKDRMYVQIGAG 376


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  ILDAHLKQDPNAKVACETV 121
           ILD H+K DPN  V+ E +
Sbjct: 448 ILDPHIKNDPNYFVSKELI 466


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 346 ISGPNIYFLSVLIHPFSYVWT 284
           IS P++YF + ++HP +  WT
Sbjct: 66  ISPPSVYFQTKIVHP-NISWT 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,597
Number of Sequences: 5004
Number of extensions: 31570
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)