Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_F13
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 185 1e-47
01_02_0051 - 10655867-10657057 184 4e-47
01_03_0090 - 12347165-12348349 182 1e-46
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 29 2.1
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 29 2.1
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 28 2.8
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 27 4.9
01_06_0751 + 31690411-31690443,31692900-31694240 27 6.4
01_06_0669 - 31063722-31063856,31064001-31064090,31064275-310643... 27 6.4
>05_01_0264 + 2030080-2031270
Length = 396
Score = 185 bits (451), Expect = 1e-47
Identities = 90/143 (62%), Positives = 113/143 (79%), Gaps = 2/143 (1%)
Frame = +2
Query: 2 FTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMVLLCGEITSKANVDY 181
FTSESV EGHPDK+CDQ+SDA+LDA L +DP++KVACET TKT MV++ GEIT+KANVDY
Sbjct: 9 FTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDY 68
Query: 182 QKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQSPNIAEGVYQ--DREEIDIGAGDQGL 355
+K+VRET ++IG+ + G D +LV IE+QSP+IA+GV+ + +IGAGDQG
Sbjct: 69 EKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGH 128
Query: 356 MFGYATDETEECMPLTVVLAHKL 424
MFGYATDET E MPL+ VLA KL
Sbjct: 129 MFGYATDETPELMPLSHVLATKL 151
>01_02_0051 - 10655867-10657057
Length = 396
Score = 184 bits (447), Expect = 4e-47
Identities = 90/143 (62%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +2
Query: 2 FTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMVLLCGEITSKANVDY 181
FTSESV EGHPDK+CDQISDA+LDA L +DP +KVACET TKT MV++ GEIT+KANVDY
Sbjct: 9 FTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDY 68
Query: 182 QKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQSPNIAEGVYQ--DREEIDIGAGDQGL 355
+K+VR+T + IG+ + G D +LV IE+QSP+IA+GV+ + +IGAGDQG
Sbjct: 69 EKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGH 128
Query: 356 MFGYATDETEECMPLTVVLAHKL 424
MFGYATDET E MPL+ VLA KL
Sbjct: 129 MFGYATDETPELMPLSHVLATKL 151
>01_03_0090 - 12347165-12348349
Length = 394
Score = 182 bits (442), Expect = 1e-46
Identities = 89/143 (62%), Positives = 110/143 (76%), Gaps = 2/143 (1%)
Frame = +2
Query: 2 FTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMVLLCGEITSKANVDY 181
FTSESV EGHPDK+CDQ+SDA+LDA L QDP++KVACET TKT MV++ GEIT+KA VDY
Sbjct: 8 FTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDY 67
Query: 182 QKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQSPNIAEGVYQ--DREEIDIGAGDQGL 355
+K+VR+T + IG+ G D +LV IE+QSP+IA+GV+ + +IGAGDQG
Sbjct: 68 EKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGH 127
Query: 356 MFGYATDETEECMPLTVVLAHKL 424
MFGYATDET E MPL+ VLA KL
Sbjct: 128 MFGYATDETPELMPLSHVLATKL 150
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 206 KHIGYDDSSKGFDWRTLNLLVAIEEQSPN 292
KH+ + S GFDWRT ++ + Q N
Sbjct: 386 KHLDKESESDGFDWRTRYNIIKVISQGLN 414
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 104 VACETVTKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDWRTLN 259
+ C +++K GM+L IT + D+ K VR+ KH GY KG +++ N
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSN 492
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 215 GYDDSSKGFDWRTLNLLV-AIEEQSPNIAEGVYQDREEIDIGAGDQG 352
G +D + W N +V + E +P +A + D E+ D G GD G
Sbjct: 927 GTEDGACAQVWDAANHIVHSFEGSAPRLAFALNSDEEDDDGGVGDSG 973
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/78 (17%), Positives = 42/78 (53%)
Frame = +2
Query: 2 FTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMVLLCGEITSKANVDY 181
+ ++ V GHP ++ Q+ D+ LDA + + N+ +A + + M +L ++ + +
Sbjct: 245 YRTKLVRLGHPARLLPQVLDSALDAQVLRADNSSLAGD--IRKEMKVLNSKLLKAKDKNT 302
Query: 182 QKVVRETVKHIGYDDSSK 235
++ +R+ ++ + ++ +
Sbjct: 303 KRDIRKELRTLAKEERKR 320
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 212 IGYDDSSKGFDWRTLNLLVAIEEQSPNIAE 301
+GYD SK DW N AI+E P+ AE
Sbjct: 175 LGYDRPSKAVDWLMRNAKAAIDE-LPDRAE 203
>01_06_0669 -
31063722-31063856,31064001-31064090,31064275-31064356,
31064448-31064494,31065074-31065130,31065368-31065433,
31065537-31065558,31065641-31065753,31065903-31065974,
31066839-31066961,31067052-31067141,31067504-31067545,
31067791-31067878,31069167-31069286,31069382-31069434
Length = 399
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 116 TVTKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQS 286
T + + L CG +SKA++ Q VR V+ + SS W LN ++ +E+S
Sbjct: 115 TRSTAAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGW--LNRMIQFKEKS 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,743
Number of Sequences: 37544
Number of extensions: 187783
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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