Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F11
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   3.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   3.8  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    24   8.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   8.7  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    24   8.7  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 205 SMHGDDAKFTRQSYG*FEILGHRDEFRRR 291
           S   DD ++ R+S G ++   +RD++R R
Sbjct: 340 SSRSDDREYHRRSDGRYDRSNYRDDYRHR 368


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 323 IQNLRKLSRCHLRRNSSRCPNISNYP 246
           + NL   S+  LRR  SR P  SN P
Sbjct: 283 VDNLADFSQSPLRRGPSRFPTNSNVP 308


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 32  IYTIFTIFLSWKSVRADCGVVSKKDWGGLSPVHIEY 139
           I+T + +  S+ S+R        K WGG   V+I Y
Sbjct: 564 IFTSYVLIYSFASIRISSFYSPAKVWGGAFLVYILY 599


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 203 EACMVTMRSLQDNHMDNLKYWDIGMNFVVGGNGKVYE 313
           E C+  M +L DNH+ N     I +    GG  K Y+
Sbjct: 112 EDCIQFMANLIDNHVKNCNKKKITLIATGGGAYKFYD 148


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 116 LSPVHIEYLPRPISLVIIQHTVTPTCETNEACMVTMRSLQDNHMDNLKYWDI 271
           +SP + + +    SL+II  +   + E  +AC++ +R L+D   +++   DI
Sbjct: 459 VSPSYEDIISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSSESVLLGDI 510


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 144 GKYSICTGDSPPQSFLE 94
           G++ +C GDSP   F E
Sbjct: 170 GRFMVCVGDSPQVFFYE 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,686
Number of Sequences: 5004
Number of extensions: 39787
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)