Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F08
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846     29   1.7  
01_03_0204 + 13771346-13772680                                         27   5.1  
07_01_0777 + 6004370-6004559,6005089-6005207,6005411-6005538,600...    27   9.0  

>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
          Length = 173

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 190 TLWRIPEEAAGRCPAQRSTEHPWRLLLTQGFYIAHHTNRIRCRTRQR 330
           TL  +   A+   P  R   HP RL    G  +AHH    R   R R
Sbjct: 48  TLTALANSASASIPTGRGRTHPLRLDGGSGHQLAHHAVDARALVRAR 94


>01_03_0204 + 13771346-13772680
          Length = 444

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 384 QCLISNFWACSKAHNYCVI 440
           Q L +  WAC+++HN C+I
Sbjct: 79  QELAARAWACAQSHNRCII 97


>07_01_0777 +
           6004370-6004559,6005089-6005207,6005411-6005538,
           6005645-6005749,6007156-6008650
          Length = 678

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 339 LF*ALPRSTSYSVCVMSNVETLCEQQSPW 253
           LF   PR+TS  + V S+V T+     PW
Sbjct: 177 LFSIRPRTTSIPISVNSDVPTMAGSHIPW 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,201
Number of Sequences: 37544
Number of extensions: 243661
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)