Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F08
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   3.5  
U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 1   QRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKK 105
           +RTK +  EH +   P G +RK+V    N E  +K
Sbjct: 26  KRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 121 SIVYWTFCCSPYSL 80
           SI+Y+TFCC P+S+
Sbjct: 253 SILYFTFCCVPFSV 266


>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 382 NGVGTKIDLAGNTWFIL--SVASFYIVFCLCDEQCR 281
           +G   KID AG TW      VA F  V   CD +C+
Sbjct: 78  SGKNKKIDTAGPTWCNAHQEVAKFICVNTDCDVKCK 113


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 164 IFLLQAIVVFIHRYIYCLLDFLLFSVFTNFVTIFLEC 54
           IFL+  IV+F   Y+Y    F +   F++F  +F+ C
Sbjct: 407 IFLVANIVIFHSFYLYFPRFFQVSHNFSSFSVLFIYC 443


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 121 SIVYWTFCCSPYSL 80
           +I+Y+TFCC P+S+
Sbjct: 253 AILYFTFCCVPFSV 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,624
Number of Sequences: 27780
Number of extensions: 213428
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)