Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F08
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    27   0.12 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    27   0.12 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.1  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 311 DVERGNA*NKPGVTC*VY 364
           DV++GN  N+P +TC +Y
Sbjct: 58  DVDKGNLVNEPSITCYMY 75


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 311 DVERGNA*NKPGVTC*VY 364
           DV++GN  N+P +TC +Y
Sbjct: 58  DVDKGNLVNEPSITCYMY 75


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 14  GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 118
           G P NTR   TP + LE             +PI N
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGN 174



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 125 YIYCLLDFLLFSVFTNFVTIFLEC 54
           Y++ LLD    S F     +F EC
Sbjct: 440 YVFQLLDSYAVSGFCLLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 14  GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 118
           G P NTR   TP + LE             +PI N
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGN 227



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 125 YIYCLLDFLLFSVFTNFVTIFLEC 54
           Y++ LLD    S F     +F EC
Sbjct: 493 YVFQLLDSYAVSGFCLLFLMFFEC 516


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 224 RPAASSGIRHNVLLSLGNSVIFLLQAI 144
           RP+   G++ +VL+ +  +  +LLQ I
Sbjct: 121 RPSKKEGLQFDVLVKVDMTRQYLLQLI 147


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 224 RPAASSGIRHNVLLSLGNSVIFLL 153
           RP   SGI    ++S  N  +F+L
Sbjct: 847 RPIVQSGIFGKYMVSPSNDALFVL 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,885
Number of Sequences: 438
Number of extensions: 2668
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)