Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F07
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    30   0.25 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.33 
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.33 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   1.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   1.3  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    27   2.3  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   5.4  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    25   7.2  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   9.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.5  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 119 SNVNLGNLTSTRRSRKLFISTRRS 48
           SNVNLG   S +R+R+ F+ST  S
Sbjct: 175 SNVNLGTRKSRKRTREYFVSTAES 198


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = -2

Query: 329 PNLFTIPTCVAA*AMLPTSLTSMPHVCRTCD-NLSASRTSCPRANPGNEAVPSKACLTPN 153
           P+   +P+ + + ++ P+ +  +P +   CD N  ++ T    A     +  S + L+  
Sbjct: 433 PSCVQLPS-IRSLSLRPSQVPLIPPL--KCDPNAFSASTPASGAVSRTPSSVSLSSLSNV 489

Query: 152 SLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSLKAI*NAXANPSES 6
           + S P K    SNV    ++S RRSRK   S+R S+  +  A + PS S
Sbjct: 490 NSSMPHKPASQSNVGPVRISSNRRSRKFSSSSRVSVSNL-LAGSPPSPS 537


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 239  DNLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNL 105
            +N+S S      +  GNEAV SK    P  L  PF+  V    N+
Sbjct: 948  ENISTSVADVSLSQAGNEAVLSKKACKPLVLIDPFEEKVLKAFNM 992


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 271 NEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVS 432
           N+VG I  A   +GIV K G+ +     + AD     F    V+R LL+ GR+S
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQA----SLAADYSVKEF--SHVSRLLLWHGRIS 820


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 438 GFGDTPGEQQLPGDFVLDEEHERSIGHHLVEDVGIFSKLIYDTN 307
           G  +   EQ   GD ++   H + I     EDV  FS   YDTN
Sbjct: 519 GTREAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTN 562


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 179 PSKACLTPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLF 66
           PSK C++   L+TP      S +         RS KLF
Sbjct: 37  PSKLCISSEKLNTPMHNRSRSGIKKHTSVKRSRSFKLF 74


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 362 PIDRSCSSSRTKSPGNCCSPGVSPNPQSSGQLVXSKTKQILPVHNLQFH 508
           PI  S S SRTKS  N  +  +SP      + V SK     P++ L+++
Sbjct: 280 PIPGSTSVSRTKSNLNALNKSLSPEQFKEAKEVLSK----YPIYGLRYN 324


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 73  LRERLVDVRLPK----FTFEYTSRLNGVLRELGVRQAFEG 180
           LRE L+++R       FT  Y    N VL+ LG+   F+G
Sbjct: 95  LREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDG 134


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 197 PGNEAVPSKACLTPN 153
           PGNEA+PS + + PN
Sbjct: 280 PGNEALPSHSSVPPN 294


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 260 PHVCRTCDNLSASRTSCP 207
           P VCRTC   + + ++CP
Sbjct: 148 PRVCRTCHTDTHTSSTCP 165


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 443 SSGQLVXSKTKQILPVHNLQFHNIIVSESCFL 538
           ++  L+ ++TK  L   N  FHN +   + F+
Sbjct: 327 NTDMLILNRTKDSLEARNSVFHNAVTFANAFM 358


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +1

Query: 241 HVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEV 399
           ++   CG   N+VG++  A   V ++N   ED   + E   ++  M   + ++
Sbjct: 817 YITLMCGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQKLMGVYEKQI 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,627
Number of Sequences: 5004
Number of extensions: 38869
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)