Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F07
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.37 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 536 KSMTLTQ*YYEIVNYEQVISVLF*SXRAARTIAGSETRPVNSN 408
           KS T T   Y  +NY + I   F S     T+ GS+   +NS+
Sbjct: 533 KSSTETPPSYNQLNYNENIERFFKSKPPVATMYGSDEEIINSS 575


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 368 DRSCSSSRTKSPGNCCSPGVSPNPQSSGQLVXSKTKQILPVHN 496
           D+  SSS + +P + CS   S + +     V  +  Q  P+++
Sbjct: 590 DKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLYD 632


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 375 ERSIGHHLVE 346
           ER IGHHL++
Sbjct: 196 ERQIGHHLIQ 205


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 429 DTPGEQQLPGDFVLDEEHERSIGHHLVED 343
           D P +Q+   D V + E+  S GH   +D
Sbjct: 685 DAPADQEGDDDQVDEREYPESHGHDSGQD 713


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 218 TSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGN 99
           TS  R+    E   SK     +SLS  +K   Y+N N  N
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNN 101


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 218 TSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGN 99
           TS  R+    E   SK     +SLS  +K   Y+N N  N
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNN 101


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 218 TSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGN 99
           TS  R+    E   SK     +SLS  +K   Y+N N  N
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNN 101


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 218 TSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGN 99
           TS  R+    E   SK     +SLS  +K   Y+N N  N
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,685
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)