Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F06
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    28   0.86 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.1  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.5  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.0  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +1

Query: 133  SRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD-- 306
            S + +++G++ +  +GT G    +   G    K S    +++ + + + AA   ++ +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 307  -NVNRHGATLTNTHIPGIGDKLSVAGKV 387
              + +HG T+   HI  +GD ++  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 313 NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 483
           N+   T T+T    G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 175 DGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPG 354
           D +SGA++ V  T     +    GS+  T+ I     T+G V + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTV-EVVEPTAGTVTETIISG 850


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 414 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 313
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 355 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 534
           I    ++ G   L  NN       AF + +  T +   S++++  GL+ + K        
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256

Query: 535 AAHTDFFNKN 564
           +  T FF +N
Sbjct: 257 SNATSFFGEN 266


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 449 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 541
           P F      +     + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,920
Number of Sequences: 5004
Number of extensions: 47059
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)