Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F04
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    67   1e-12
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    28   0.84 
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   4.5  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   5.9  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   7.8  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   7.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.8  

>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
 Frame = +2

Query: 176 PEDKRKIIGDVFIRI----AEQAVHDLNLQEDQVLLGQGTLRPDLIESASALCSTNAATI 343
           PE KRKIIG+ FI +    AE+ V + N + + +L  QGTL PD+IES S      + TI
Sbjct: 313 PEKKRKIIGNTFIHVFEREAERIVKETNGKVEYLL--QGTLYPDVIESISF--KGPSQTI 368

Query: 344 KTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGLPPAMV 478
           KTHHN               EPL++  KDEVRALG  LG+  ++V
Sbjct: 369 KTHHN--VGGLLKDMKLKLIEPLRELFKDEVRALGELLGIEHSLV 411


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 436 HLILVKVFQRFHNPTPLPELTDQFSVVM 353
           H+I ++ ++RF  P  +P LTD   V M
Sbjct: 139 HVIPLEYYERFREPMTIPNLTDNERVEM 166


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 152 PLLCHAISPEDKRKIIG 202
           P+LC AI+P+ KR + G
Sbjct: 370 PILCMAITPDGKRVVTG 386


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 72 EAFTTWSRTPSSRKHLSTLELS 7
          +A+T + R P+S KH+S +  S
Sbjct: 31 DAYTAYHRLPASAKHISEISKS 52


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 158  LCHAISPEDKRKIIGD 205
            +C A++ EDKR++ GD
Sbjct: 1132 VCRALADEDKRRLTGD 1147


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 324 EQRADADSMR-SGLRVPCPRSTWSSCKLRSCT 232
           E RA  D ++  G+  P P ++WS C L + T
Sbjct: 398 ELRASLDGIKIRGIDCPKPVTSWSQCGLSAQT 429


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 155 LLCHAISPEDKRKIIGDVFIRI 220
           LL  AIS E K  + GD F+RI
Sbjct: 158 LLADAISKETKPSVWGDNFLRI 179


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 290 PDLIESASALCSTNAATIKTHHNDTE 367
           PDL E  S L S    T  +HHN  E
Sbjct: 493 PDLNELESQLTSHTNITTSSHHNPRE 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,221
Number of Sequences: 5004
Number of extensions: 34255
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)