Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F04
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520...    61   5e-10
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026...    30   1.1  
12_02_0139 - 14277389-14279119                                         29   2.6  
07_01_0873 - 7257016-7257957,7260083-7260262                           29   2.6  
08_01_0074 + 530207-532603                                             28   4.5  
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549...    27   6.0  
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535...    27   7.9  

>08_02_0213 +
           14349821-14350396,14351360-14351610,14351695-14352070,
           14352210-14352341,14352425-14352600,14353176-14353299
          Length = 544

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = +2

Query: 176 PEDKRKIIGDVFIRIAEQAVHDLN--LQEDQVLLGQGTLRPDLIESASALCS--TNAATI 343
           PE KRKIIG  FI + +   H L   + +    L QGTL PD+IES     S  T++ TI
Sbjct: 314 PEMKRKIIGREFIAVFDDFAHKLEQKIGKRPGYLVQGTLYPDVIESCPPPGSGRTHSHTI 373

Query: 344 KTHHNDTEXXXXXXXXXXXXEPLKDFHKDEVRALGAELGLPPAMVE 481
           K+HHN               EPLK   KDEVR LG+ L +P + ++
Sbjct: 374 KSHHN--VGGLPKDMKLKLIEPLKLLFKDEVRKLGSILNVPESFLK 417


>01_02_0059 -
           10701859-10701963,10702034-10702153,10702534-10702609,
           10702897-10703276
          Length = 226

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 112 RSC-GGRGRAGTSHASTLPRDFA*RQAEDHRRCLHQ 216
           R C GG GR G      +PR  A R  ++ RRC H+
Sbjct: 116 RGCWGGGGRGGWYSGVAVPRGAAARSWQEQRRCPHK 151


>12_02_0139 - 14277389-14279119
          Length = 576

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 152 PLLCHAISPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLGQGTLRPDLIESASA 316
           P  CH I       + G V+IR      H L  +   +  G G L   LI SAS+
Sbjct: 99  PTSCHVIRGSIPSCLAGGVYIRNGPNPQHRLPQRTHHLFDGDGMLHSLLIPSASS 153


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 116 PAGVAGGRVRHTPLL-CHAISPEDKRKIIGDVFIRIAEQAVHD 241
           P+ V GG  R T ++ C   S +  R I+GD F R++E+   D
Sbjct: 178 PSPVQGGPPRLTSVVKCGDASRDRIRAILGDAFSRVSEETRKD 220


>08_01_0074 + 530207-532603
          Length = 798

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 58  RRKRFTSVRGWQHCHTRERSCGGRGRAGTSHASTL 162
           R K+    +G    H +++  GG GRAG  HA  L
Sbjct: 20  RTKKQQQNQGLPRQHQQQQEAGGGGRAGREHAHHL 54


>06_03_0614 -
           22753092-22753349,22754059-22754277,22754712-22754960,
           22755186-22755275,22755379-22755456,22755562-22756337,
           22757042-22757384
          Length = 670

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 173 SPEDKRKIIGDVFIRIAEQAVHDLNLQEDQVLLG-QGTLRPDLIESASALCSTNAATIK 346
           +PE +R+I+GD+   + EQ V++   +   +LL    T   +L+ES   L    A  +K
Sbjct: 579 NPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMK 637


>05_01_0595 +
           5344721-5345249,5349183-5349264,5349813-5350507,
           5350583-5350839,5350934-5351615,5351689-5351892,
           5351981-5352715,5352799-5353181
          Length = 1188

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 194 SSACLQAKSRGRVEACDVPARPRPPQDRSRVWQ 96
           ++AC +A+S     A  VPAR      R  VW+
Sbjct: 184 ATACARARSAASAPARPVPARVEMSDSRDPVWE 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,338
Number of Sequences: 37544
Number of extensions: 287423
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)