Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_F01
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   189   3e-49
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.35 
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.5  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    26   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   7.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.6  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  189 bits (460), Expect = 3e-49
 Identities = 93/181 (51%), Positives = 128/181 (70%), Gaps = 2/181 (1%)
 Frame = +1

Query: 22  KILKAGAIEPDTFETSISQALVELEINS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 195
           KI+K  + +P   +  ++Q L +LE +S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 196 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 375
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 376 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKAHLDENQQTTIEHKVDTFQSVYQKLTAREV 555
           ++AILED+VFP EI+GKR R   DG + IK  LD     T+++K+ +F SVY KLT + V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183

Query: 556 T 558
           T
Sbjct: 184 T 184


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 271  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 450
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 451  SQLIKAHLD-ENQQTTIEHKV 510
            S ++   LD ++ Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 184 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 276
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 52  DTFETSISQALVELEINSDLKAQLRELYITKAKEIEL 162
           +T+E  I + L++L   S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 28   LKAGA-IEPDTFETSISQALVE--LEINSDLKAQLRELY 135
            +KA A I+PD FE +I Q L +     N  LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 304 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 429
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 25   ILKAGAIEPDTFETSISQALVELEINSDLKAQLRELYITKAKEIEL 162
            I + G +  +TF+  +SQA ++    + L   +RE ++    E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,699
Number of Sequences: 5004
Number of extensions: 49903
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)