Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E24
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.1  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    26   2.8  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   3.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   6.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.6  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   8.6  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   8.6  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   8.6  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/85 (21%), Positives = 32/85 (37%)
 Frame = +3

Query: 213 VRYAE*LQLSIKRSPVKMGPAVPEITRNK*ADRQKDGQKETKKL*FVYWV*VS*IHLYLF 392
           + Y     LS     V+       +  NK  D       E ++    +W+ +S       
Sbjct: 218 ITYRNGQALSYYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQIREFWLSLSESERRSL 277

Query: 393 SKKKNILILQTKKKKKNSSCPCYLC 467
            K +   +LQ  K+++  SC C +C
Sbjct: 278 VKVEKEAVLQKMKEQQKYSCSCSVC 302


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 203 NIKSTLCGVTSAIYQKKSRQNGSSRSGDYPEQISRQTERRTERDKKIIICVLGISIVDTF 382
           N+KSTL G+ + +   + +         Y +  SRQ +   ++ +K  I  +  S + TF
Sbjct: 34  NMKSTLSGLFAPLKLDEEQAEDDESLSSYEDYASRQIDDDLKKQRKKGITFIDYSSLITF 93


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 YDCLTLVSLRGTLPIFEYQK-YVMRSNFSYLS 246
           Y  L LVS RGTL +F++ K +V+    SY +
Sbjct: 334 YQYLALVSERGTLKLFDFVKEHVLDVFHSYFA 365


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 WRLCIHFYDCLTLVSLRGTL 192
           W L  +F DC TL S++ TL
Sbjct: 78  WFLSTNFQDCSTLPSVKSTL 97


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 27  MYLIYLICTNFICSSKINILINDNFIC 107
           + +I +ICT++  S K+ ILI+   IC
Sbjct: 116 LQIIPIICTHYAASMKLPILISLFRIC 142


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 33  LIYLICTNFICSSKINILINDNFICL*FY*THNLAFMYSFL 155
           L++ + +  +CSS+I   I DN +   FY    L  +YS L
Sbjct: 442 LLFTLRSMTLCSSEIYQRIADNLLSNIFYQEEILLLVYSAL 482


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 SGDYPEQISRQTERRTERDKKIIICVLGISIVD 376
           + D P++I   +  RT++    I+ VLG+ ++D
Sbjct: 80  NADSPKKIRMCSAARTDKGVHAIVNVLGLKVLD 112


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 GTNKQTDRKTDRKRQKNYNLC 354
           G+N + + K D+K+  N +LC
Sbjct: 294 GSNNEQEEKQDKKQSTNRDLC 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,581
Number of Sequences: 5004
Number of extensions: 34297
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)