Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E24
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628...    29   2.8  
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    29   2.8  
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667     27   8.7  
01_03_0281 - 14570635-14574633                                         27   8.7  

>02_04_0141 +
           20162276-20162285,20162460-20162726,20162734-20162881,
           20163025-20163091,20163878-20163955,20164034-20164039
          Length = 191

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 393 SKKKNILILQTKKKKKNSSCP 455
           SKK+N L  + KKKKKNS CP
Sbjct: 168 SKKRN-LKKKKKKKKKNSGCP 187


>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 190 LPIFEYQKYVMRSNFSYLSKEVPSKWVQPFR 282
           L I++  K V++S  SY+ +EVPSK ++ +R
Sbjct: 250 LGIYDGLKVVLKSMASYIEREVPSKTLKLWR 280


>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
          Length = 569

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 147 SFL*LSNVSIITRNPTYFRISKVR 218
           SF  LS+   + + P YFR+SKVR
Sbjct: 100 SFKELSDEGALDKGPMYFRLSKVR 123


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 145  IHFYDCLTLVSLRGTLPIFEYQKYVMRSNFSYLSK 249
            IH + C  L S+RG   I    KYV R+N   +S+
Sbjct: 1178 IHIWSCPELRSIRGKQDIKVESKYVERNNGMAISE 1212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,104,603
Number of Sequences: 37544
Number of extensions: 165380
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)