Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E24
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    27   7.8  
U80437-11|AAN84840.1|  184|Caenorhabditis elegans Hypothetical p...    27   7.8  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    27   7.8  
AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 82  FLLMIILYAYNFIRLIIWRLCIHFYDCLTLVSLRGTLPIF 201
           +LLM+ L  ++ + LI+  +C   +D L +      LPIF
Sbjct: 71  YLLMLALAIFDILSLIVDSICTGIFDILGISFCNYPLPIF 110


>Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical
           protein F35B12.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 115 FIRLIIWRLCIHFYDCLTLVSLRGTLPIFEYQKYVMRSNFSYLSKEVPSKWVQPFR 282
           F   +IW  C+H  D L +V     L   +   +   +N S  SKE  +  V P +
Sbjct: 265 FCGTVIWE-CLHSIDGLIMVMFNERLTFLQKTFFASSTNASVASKEKGTATVTPMK 319


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 239 IYQKKSRQNGSSRSGDYPEQISRQTERRTERDKK 340
           I++KK R+NG+    +   +I  + ER+ +R+KK
Sbjct: 776 IFKKKRRENGNEGGDNDVCRICCENERQEKREKK 809


>U80437-11|AAN84840.1|  184|Caenorhabditis elegans Hypothetical
           protein C43E11.12a protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 193 PIFEYQKYVMRSNFSYLSKEVPSKWVQPFR 282
           PIF +QKY++    S + +E     ++P R
Sbjct: 5   PIFSFQKYIVEFKMSPIKREPEEACLKPMR 34


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 FSKKKNILILQTKKKKKNSSCPCYLCLSTK 479
           +   K + IL     KK S CPC LC   K
Sbjct: 31  YVNSKKLTILCKCLSKKESQCPCRLCRMKK 60


>AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical
           protein Y116A8B.5 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 382 KCIYDTYTQYTNYNFFVSF-CPSFCLSAYLFRVI 284
           KC++D    +T Y F + F  P+F +  +  +VI
Sbjct: 207 KCMFDADATFTLYTFVIGFAAPAFLIIIFYVQVI 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,921,442
Number of Sequences: 27780
Number of extensions: 182395
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)