Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E23
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653...    29   2.0  

>12_02_1225 -
           27164595-27164842,27164959-27165133,27165213-27165307,
           27165391-27165444,27165794-27165868,27165961-27166081,
           27166494-27166549,27166698-27166762,27166962-27167050,
           27167155-27167812,27168182-27168202,27168777-27168859,
           27169081-27169136,27169413-27169619,27170628-27170760
          Length = 711

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 211 RTTGVYLILFVNITFLCSSPL-GREFYICFYSNFFFILYH 327
           RT GV+ +L   + FLC+  L  R  Y+  + +F + L H
Sbjct: 51  RTFGVWTLLTCTLCFLCAFNLENRPLYLATFLSFIYALGH 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,493
Number of Sequences: 37544
Number of extensions: 131900
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)