Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E23
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    29   1.8  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    27   5.6  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 196 LSVVFRTTGVYLILFVNITFLCSSPLGREFYICFYSNFFFIL 321
           L+ + R + +Y+I F NI     S L + FY+CFY +   I+
Sbjct: 32  LAFISRKSSIYVIAFFNII----SDLLQLFYLCFYFSLSIII 69


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 259 CSSPLGREFYICFYSNFFFILYHVRIKS 342
           C+    ++F++C Y NF   +Y + +KS
Sbjct: 36  CTELTFKKFFVCLYVNFMAKMYFLDVKS 63


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 268 PLGREFYICFYSNFFFILYHVRIKSXXXXXXXHYFSDFKNILKRISTVYICYLSY 432
           PLGR  Y  +  +FF + +++ I         H++S F+  +     V  C LSY
Sbjct: 603 PLGRLSYCAYIVHFFTLFWYLNIND----SSMHFYSTFQVFI--YYAVPACLLSY 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,052
Number of Sequences: 27780
Number of extensions: 154351
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)