Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E22
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    34   0.011
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    29   0.32 
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    26   4.0  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.3  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   5.3  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   5.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.3  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.0  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.2  

>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -1

Query: 314 GTSSNSNDKIVCGSHIFEYCSSTQWSSLSPDPKGSIGKLNKKSGRLERT 168
           GT+S   D   C        S TQW S  PD   S+G L  K+G+L  T
Sbjct: 98  GTASTCQDNTYCSYACKPGMSKTQWPSEQPDNGVSVGGLYCKNGKLYLT 146


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 472 IHMILRCRLWRVRKKIYYCKKFHSRTLNEHNKT*KTGL 359
           +  ++RC++  +++K+YY  K H     E  K  KTG+
Sbjct: 657 VEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGI 694


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 323 SCIGTSS--NSNDKIVCGSHIFEYCSSTQWSSLSP 225
           S +G  S  N +D I+C    F   SS  W+SL P
Sbjct: 277 STLGAESIINWSDCIICAGTTFTDYSSNGWTSLPP 311


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 527 SHQEATIIHSGSQNSYKKYSYDSSMPFVAGQEENLLLQKIS 405
           SH  ++ +HS S +S    S   S+P  AG   +  LQ+IS
Sbjct: 620 SHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTS--LQRIS 658


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 422 LLQKISQSNTKRTQQDLKDWIDALTLEFYNVLGSCIGTSSNSNDKIV 282
           LLQ   + NT       ++  + L L FY+ LG  + T+ N+ +K V
Sbjct: 115 LLQLEERENTSEDICQSEENANMLKLNFYHSLGFDLETAENTGNKRV 161


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 380 QDLKDWIDALTLEFYNVLGSCIGT 309
           +DL +WI   T++FY  +    GT
Sbjct: 49  EDLNEWIAMNTMDFYTQINMLYGT 72


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 512 TIIHSGSQNSYKKYSYDSSMPFVAGQEENLLLQKISQSNTKRTQQDLKDWIDA 354
           TI ++   N  KK +  S   FV  +   LLL  + +  + R    + +WI+A
Sbjct: 667 TIYYTPFYNLLKKSAQQSLFHFVFDRPLLLLLNSLLEDESGRDYTAMMNWINA 719


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 524 HQEATIIHSGSQNSYKKYSYDSSMPFVAGQ-EENLLLQKIS 405
           H +  + +S S N+Y++Y +D  +PF   Q   N   QKI+
Sbjct: 78  HNDLFLTYSLS-NAYREYIFDGGLPFSKHQVRVNRYQQKIN 117


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 301 LLLVPMQDPSTL*NSKVNASIQSFKSCCVR 390
           LLL+P   P +L  SK + +   F S C++
Sbjct: 211 LLLIPKHSPPSLERSKFSRAFCDFVSNCLK 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,628
Number of Sequences: 5004
Number of extensions: 39898
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)