Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E22
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904...    28   4.0  
01_05_0612 - 23652121-23652400,23653031-23654427                       28   4.0  
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811...    28   5.3  
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075     27   9.3  
08_01_0018 - 141542-142108                                             27   9.3  

>06_03_0479 -
           21289903-21290124,21290207-21290342,21290435-21290490,
           21290734-21290811,21290902-21290988,21291067-21291127,
           21291220-21291308,21291448-21291545,21291655-21291754,
           21293968-21294030
          Length = 329

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 221 GLVIVNSTALTNSIRKYDYHKLFCHLSYYLSLCKIPAHC 337
           GL++V+    T S  ++ ++K+  +L YY  +C +   C
Sbjct: 146 GLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDC 184


>01_05_0612 - 23652121-23652400,23653031-23654427
          Length = 558

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 154 MMLCHVLSNLPDFLF-NFPIDPL-GSGDSEL 240
           ++LC V S +PDF +   P++P  GS D EL
Sbjct: 265 ILLCDVFSPIPDFRYVRLPVNPYPGSYDQEL 295


>09_02_0374 -
           8112021-8112820,8112908-8113152,8113256-8113455,
           8113584-8114235,8114369-8114661
          Length = 729

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 524 HQEATIIHSGSQNSYKKYSYDSSMPFVAGQEENLLLQKISQSNTKRTQQDLKDWIDALTL 345
           HQ+    HS    S  KY   + + F + Q    +   I++S TK   QD   W+ ALT 
Sbjct: 299 HQDLLASHSSFGVSKLKYPLHTLLVFDSRQHALPVAWIITRSVTK---QDTLRWMKALTE 355

Query: 344 EFYNV 330
             Y+V
Sbjct: 356 RIYSV 360


>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
          Length = 479

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 368 DWIDALTLEFYNVLGSCIGTSSNSNDKIVCGSHI 267
           DW +  T++ ++ LG C    S     +VC  H+
Sbjct: 6   DWRNRATVKCWDELGVCSSPPSQQQHPVVCTIHV 39


>08_01_0018 - 141542-142108
          Length = 188

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 236 NSTALTNSIRKYDYHKLFCHLSY 304
           N+T  TN+   + +H   CH+SY
Sbjct: 166 NATTTTNNHNPHHFHPTTCHISY 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,107
Number of Sequences: 37544
Number of extensions: 219676
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)