Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E22
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    31   0.67 
U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -1

Query: 449  FVAGQEENLLLQKISQSNTKRTQQDLKDWIDALTLEFYNVLGSCIGTSSNSNDKIVCGSH 270
            F+  +E    L K+SQ  T  T Q L  W + L+        + IG    SND++     
Sbjct: 3368 FIRTKEHLHPLSKLSQ--TDETAQKLTKWAEKLS--------TLIGNMKRSNDQLSTTFS 3417

Query: 269  IFEYCSSTQW-SSLSPDPKGSIGKLNKKSGRLE 174
            + +Y S T W S ++ D +  +  L   SG  E
Sbjct: 3418 VVDYNSYTTWISQINGDSQELLTDLQLFSGFFE 3450


>U00050-5|AAM22063.1|  291|Caenorhabditis elegans Hypothetical
           protein F09F7.7a protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 428 NLLLQKISQSNTKRTQQDLKDWIDALTLEFYNVLGSCIGTSSNSNDKIVCGSHI 267
           NL  +++ +S  +  Q D+  WI    L   N++   + T SN N   +C  H+
Sbjct: 170 NLEYEEVKKSAIEMHQDDM--WIWGNRLISINLINGSVMTLSNDNKSFLCYVHM 221


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 59  TN*YAYLYTNIFKIHLVIRAPCNFNFEWATS 151
           TN Y YL  ++ K H V+  P +   EW  S
Sbjct: 87  TNLYPYLCASVLKKHEVVDYPSDQRLEWLFS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,324,347
Number of Sequences: 27780
Number of extensions: 222276
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)