Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E21
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    77   2e-15
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    76   5e-15
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.0  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 35/53 (66%), Positives = 42/53 (79%)
 Frame = +3

Query: 15  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVK 173
           MSKVS   +   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 1   MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +3

Query: 15  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVK 173
           MSKVS  ++   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 1   MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 301  IPTHYLKTLGKVPSVYTDSLSRFILVEIQ 215
            +P H +K LGK+  VY +S+S   L+EIQ
Sbjct: 2542 LPPHLVKYLGKLYGVYHESVS---LLEIQ 2567


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 30  RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 158
           ++ L++ V      SKE  ++   T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 48   CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 164
            C N +++SS   K  F +TV +     +YD P+ D  + G
Sbjct: 939  CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 334  LHVLGYSVSRGIPTHYLKTLGKVPSVYTDSLSRFILV 224
            L  + + V RG+P  Y +   K+P+ Y     R +++
Sbjct: 2150 LLAIAFVVYRGLPNFYRQCPSKIPAFYRSLFRRRLIM 2186


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 118 ICSSTVSKNLRFFSFEDWMTAL 53
           IC S  +  L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,775
Number of Sequences: 5004
Number of extensions: 49864
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)