Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E21
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    83   2e-16
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    38   0.006
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/59 (62%), Positives = 48/59 (81%)
 Frame = +3

Query: 15  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKYVYLKR 191
           MSKVSR++L E +  V++ S EK RKF ET+ELQIGLKNYDPQKDKRFSG+++  ++ R
Sbjct: 1   MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPR 59


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +3

Query: 126 KNYDPQKDKRFSGTVKYVYLKR 191
           KNYDPQKDKRFSG+++  ++ R
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPR 29


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 127 LRPICSSTVSKNLRFFSFEDWMTALTHS 44
           L PI + T  +  +FF+FE +  A THS
Sbjct: 65  LPPILAETPKRATKFFTFEQYKIAFTHS 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,647
Number of Sequences: 27780
Number of extensions: 267522
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)