Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E20
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 2.0
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 2.0
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 2.6
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 3.4
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 25 6.0
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 25 6.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 7.9
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 24 7.9
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 24 7.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 24 7.9
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 243 IY*REFESSASGRKVERFPFVVVWTCYEKIGSAFE*NSNEYECGRME 383
++ RE ++ R++ ++ F C EK AFE S +Y+ G +E
Sbjct: 296 VHPREIDAFWLQREIAKY-FADAVVCQEKTNQAFEALSADYDLGELE 341
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 398 ALPLLFHPSTFIFITILLKCASY 330
ALP+L +P T I+ ++L CA +
Sbjct: 230 ALPILVYPPTLIWPSVLSSCALF 252
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 2.0
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 271 PVVEKLKGSLLSWYGHVMRR*EAHLS 348
P ++KL+ SL +W+ ++RR ++++S
Sbjct: 192 PELDKLRHSLYNWWVSILRRLQSNIS 217
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 354 YFTQM-RFLSSHNMSIPRQKGTFQLFYHWQ 268
Y Q+ +F+SSH +I + G FQL W+
Sbjct: 627 YIPQLYKFMSSHFDTIMKDVGAFQLHRDWK 656
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 331 IFS*HVHTTTKGNLSTFLPL-AELSNSL 251
I+ H+HTTT G L+T L + A+ NS+
Sbjct: 177 IYRTHIHTTTHGELTTKLLIGADGRNSI 204
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 347 LKCASYLLITCPYHDKREPFNFSTTGRTFK 258
LK +YL C Y+ R F+F R F+
Sbjct: 53 LKYLAYLRKACRYNPSRGAFHFRAPSRIFQ 82
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 347 LKCASYLLITCPYHDKREPFNFSTTGRTFK 258
LK +YL C Y+ R F+F R F+
Sbjct: 53 LKYLAYLRKACRYNPSRGAFHFRAPSRIFQ 82
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -1
Query: 327 SHNMSIPRQKGTFQLFYHWQNFQTPSNIFCFFTNAKF 217
S+++ + + L HW NF T + C F A +
Sbjct: 1768 SNHLCLTASSTEWSLIKHWCNFFTETGPLCDFPRAYY 1804
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 347 LKCASYLLITCPYHDKREPFNFSTTGRTF 261
LK +YL C Y+ R F+F R F
Sbjct: 53 LKYLAYLRKACRYNPSRGAFHFRAPSRIF 81
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 391 LYFSILPHSYS-LLFYSNALPIFS 323
L+F+ LPH Y+ LLF S L S
Sbjct: 152 LFFAHLPHGYAGLLFVSQILDFLS 175
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 239 AFLLMQNLVNLQLTTKKL*GVFCFTRIVLVKGIQ 138
AF+ + N ++Q ++ G FC R +LV ++
Sbjct: 115 AFIWLANESDIQNAQVEMQGAFCLKRSILVHSVK 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,366
Number of Sequences: 5004
Number of extensions: 35028
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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