Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E20
         (408 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens ...    29   4.6  
AK124259-1|BAC85818.1|  132|Homo sapiens protein ( Homo sapiens ...    29   6.0  
AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane hel...    29   6.0  
AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane hel...    29   6.0  

>AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45873 fis, clone OCBBF3006986, weakly  similar
           to CDC4-like protein. ).
          Length = 1314

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 386 LFHPSTFIFITILLKCASYLLITCPYHDKREPFNFSTTGRTFKLPLIYSAFLLMQNLVNL 207
           L  PS  I +T+L K   + +      ++    N  T    F+L LI   FL  + LVN 
Sbjct: 193 LLRPSDEIKLTLLQKMLEWAIS----ENREAKTNPVTAENAFRLVLIIQDFLQSEGLVNS 248

Query: 206 QLTTKKL 186
            + T+KL
Sbjct: 249 NMWTEKL 255


>AK124259-1|BAC85818.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42265 fis, clone TKIDN2014771. ).
          Length = 132

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 398 ALPLLFHPSTFIFITILLKCASYLL 324
           ALPL FHP +F+ +  L  C S  L
Sbjct: 57  ALPLCFHPPSFLMVFFLPHCLSLCL 81


>AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
 Frame = -2

Query: 401 FALPLLFHPSTFIFITILLKCASYLLITCPYHDKREPFNFSTTGRTFKLPLIYSA--FLL 228
           FAL      STF+ I I   C    +++      R     +       + L Y A  F+ 
Sbjct: 200 FALCSFIQTSTFVVIFISYFCILITVLSIKSSGGRSKTFSTCASHLIAVTLFYGALLFMY 259

Query: 227 MQNLVNLQLTTKKL*GVFCFTRIVLVKGIQYGVLQKDRE---KVCLKRVG 87
           +Q   +  L T K+  VF      +   I Y    KD +   K  L+R+G
Sbjct: 260 LQPTTSYSLDTDKVVAVFYTVVFPMFNPIIYSFRNKDVKNALKKLLERIG 309


>AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
 Frame = -2

Query: 401 FALPLLFHPSTFIFITILLKCASYLLITCPYHDKREPFNFSTTGRTFKLPLIYSA--FLL 228
           FAL      STF+ I I   C    +++      R     +       + L Y A  F+ 
Sbjct: 200 FALCSFIQTSTFVVIFISYFCILITVLSIKSSGGRSKTFSTCASHLIAVTLFYGALLFMY 259

Query: 227 MQNLVNLQLTTKKL*GVFCFTRIVLVKGIQYGVLQKDRE---KVCLKRVG 87
           +Q   +  L T K+  VF      +   I Y    KD +   K  L+R+G
Sbjct: 260 LQPTTSYSLDTDKVVAVFYTVVFPMFNPIIYSFRNKDVKNALKKLLERIG 309


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,186,609
Number of Sequences: 237096
Number of extensions: 1197607
Number of successful extensions: 1854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)