Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E20
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    28   2.3  
Z73422-14|CAD37351.1|  441|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z70307-16|CAC42262.2|  441|Caenorhabditis elegans Hypothetical p...    27   3.9  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   5.2  
AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical ...    27   5.2  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z68119-2|CAA92192.1|  457|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U16708-1|AAC46497.1|  457|Caenorhabditis elegans odr-7 protein.        26   9.1  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
           protein Y41D4B.24 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 136 YCIPLTKTIRVKQNTP*SFLVVSCKFTKFCISKKAEYIRGSLK 264
           Y IP+     +   +  SFL+V+  F ++C +  + Y+R + K
Sbjct: 114 YMIPILTVSHIAMTSS-SFLIVAASFERYCATLNSPYLRFAQK 155


>Z73422-14|CAD37351.1|  441|Caenorhabditis elegans Hypothetical
           protein C39E9.14b protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 124 CRTPYCIPLTKTIRVKQNTP*SFLVVSCKFTKFCISKKAEYIRGSLKVLPVVEKLK 291
           C   + + +TK+   K+ T   F  +S +  KFC+S  A  +  S K    ++ L+
Sbjct: 225 CGVTFMVVITKSDLGKEFTDAQFAKISIQLRKFCLSLGATLVFTSAKETKNIQLLQ 280


>Z70307-16|CAC42262.2|  441|Caenorhabditis elegans Hypothetical
           protein C39E9.14b protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 124 CRTPYCIPLTKTIRVKQNTP*SFLVVSCKFTKFCISKKAEYIRGSLKVLPVVEKLK 291
           C   + + +TK+   K+ T   F  +S +  KFC+S  A  +  S K    ++ L+
Sbjct: 225 CGVTFMVVITKSDLGKEFTDAQFAKISIQLRKFCLSLGATLVFTSAKETKNIQLLQ 280


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 241 EYIRGSLKVLPVVEKLKGSLLSWYGHVMRR*EAHLSKIVMNMNVEGWK 384
           E IR    V   +  +K   L W GHV RR +   + ++      GWK
Sbjct: 792 EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWK 839


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 241  EYIRGSLKVLPVVEKLKGSLLSWYGHVMRR*EAHLSKIVMNMNVEGWK 384
            E IR    V   +  +K   L W GHV RR +   + ++      GWK
Sbjct: 967  EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWK 1014


>AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical
           protein C30E1.4 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 319 HVHTTTKGNLSTFLPLAELSNSL*YILLFY*C 224
           + + TTKG+L T L    L N+L  I+LF  C
Sbjct: 33  YTNLTTKGDLITSLFTVHLENNLTVIILFNLC 64


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 241 EYIRGSLKVLPVVEKLKGSLLSWYGHVMRR*EAHLSKIVMNMNVEGWK 384
           E IR    V   +  +K   L W GHV RR +   + ++      GWK
Sbjct: 706 EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWK 753


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 241 EYIRGSLKVLPVVEKLKGSLLSWYGHVMRR*EAHLSKIVMNMNVEGWK 384
           E IR    V   +  +K   L W GHV RR +   + ++      GWK
Sbjct: 318 EDIRKMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWK 365


>Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical
           protein Y49E10.20 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 48  YGRLQQQTYHVRVANSFKTNFLTVLL*NPILYSFN*NDSCKTKH 179
           +  +Q++ YH      F  N   V   N  LY FN N SC T H
Sbjct: 104 FDEVQEKVYH-----RFADNDTRVFYKNQKLYHFNKNASCPTCH 142


>Z68119-2|CAA92192.1|  457|Caenorhabditis elegans Hypothetical
           protein T18D3.2 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 408 HFLCPSSTFPSFHIHIHYYFTQMRFLSSHNMSIPRQ 301
           HF C    FP+F I      T    L   N ++P+Q
Sbjct: 31  HFQCIPGIFPNFRISTELIKTMTDKLEQPNNNVPQQ 66


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 372  HIHIHYYFTQMRFLSSHNMSIPRQKGTFQLFY 277
            HI IH  F+Q+  + + N  IP   G    FY
Sbjct: 954  HISIHSAFSQLDDMRNQNKQIPLNIGLENAFY 985


>U16708-1|AAC46497.1|  457|Caenorhabditis elegans odr-7 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 408 HFLCPSSTFPSFHIHIHYYFTQMRFLSSHNMSIPRQ 301
           HF C    FP+F I      T    L   N ++P+Q
Sbjct: 31  HFQCIPGIFPNFRISTELIKTMTDKLEQPNNNVPQQ 66


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 395 LPLLFHPSTFIFITILLKCASYLLITCPYHD---KREPFNFSTTGRTFKLPLIYSAFLLM 225
           + + +     IF  I +   +Y+L + P++D   KR+ +NF    + F    + + F + 
Sbjct: 231 MAIAYKAKAMIFRLIYIILFAYMLCSGPFYDNYEKRDEYNFL---QYFSFSYVLTVFFVQ 287

Query: 224 QN 219
           QN
Sbjct: 288 QN 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,012
Number of Sequences: 27780
Number of extensions: 189219
Number of successful extensions: 420
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)