Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E19
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   155   6e-39
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   3.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   4.6  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   6.1  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  155 bits (375), Expect = 6e-39
 Identities = 83/195 (42%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
 Frame = +1

Query: 1   LYSTNHKDIGTLYFIFGI*AGMIGTSLRLLIRAELGTPGS--LIGDDQIYNTIVTAHAXX 174
           ++STN KDI  LY +FG+ +G+IG+    +IR EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 175 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNISFXXXXXXXXXXISRRIVENGAGT 354
                          N LVPL++GAPD+A+PR+NN +F          +   + E G G 
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGG 131

Query: 355 G*TVYPPLSSNIAHGGRSVDLAIFSLHLAGISSILGAXXXXXXXXXXXXXHLSFDQIPLF 534
           G TVYPPLSS  +H G ++DLAI SL L GISS LG+              LS  Q+PLF
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLF 191

Query: 535 V*AVGITAFLLLLSL 579
             A+ IT+ LLLL+L
Sbjct: 192 AWAIMITSILLLLTL 206


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 342 WSRYWLNCLS 371
           W+RYW++CLS
Sbjct: 24  WTRYWIDCLS 33


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 411 NRSTSMSNIRRKRGINSSASTCSIFY 334
           N+      + R+RGI   A TCS+ Y
Sbjct: 92  NQFLDKLEVERRRGITVKAQTCSMIY 117


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 258 SFPSNK*YKFLTST--PLINPFNL*KNCRKWSRYW 356
           SF   K  K+LT    PL +PF +    R W  YW
Sbjct: 28  SFNLQKHLKYLTKMLDPLPSPFTVLDASRAWMVYW 62


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 429 RENS*INRSTSMSNIRRKRGINSSASTCSIFYNSS 325
           R+N   N ST+     ++R IN+ AST     NS+
Sbjct: 124 RKNQMSNNSTTYHRETKRRNINAEASTSDNCNNSN 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,635
Number of Sequences: 5004
Number of extensions: 25464
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)