Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E18
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    29   0.42 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   0.74 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   3.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   9.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 130 NHTQKIKSLVRIALRNPEKQYERNQYTEEGTK*YYY 237
           +H+QK+++  ++ L N  K YE+  YT + TK  YY
Sbjct: 114 DHSQKLQTSQQV-LTNQIKSYEKKYYTLKKTKSAYY 148


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 28  FRYSHD*TYGLRCSNILDYISNNGHC 105
           FR+S D  YGL  S  +DY+SN   C
Sbjct: 874 FRFSFD--YGLHWSEWIDYLSNKTEC 897


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 445 IFVFTI-FFLEKRIYVKRKLIYILESFSNCTRSSVIPKFGRDNKIN 311
           +F+FT  F +    Y+    I+ L S  NC    + P+F   ++IN
Sbjct: 237 LFIFTTKFSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQALHRIN 282


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 412 RIYVKRKLIYILESFSNCTRSSVI 341
           R Y   KL+ ++ESF+N T  SV+
Sbjct: 350 RDYGMNKLVSLIESFNNITMESVL 373


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 480 NSTNRACFRKGQYLSSQFFSSK 415
           +S   AC R G  LSS F+SS+
Sbjct: 234 SSNLTACNRSGSSLSSNFYSSR 255


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 64  CSNILDYISNNGHCEIMHLWRRNHTQKIKSL 156
           C+N  + +    HC+I+H W     QK  SL
Sbjct: 233 CTNFYEPVFCFEHCKIVHDWDIKKIQKDYSL 263


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +1

Query: 4   LFILCIYKFRYSHD*TYGLRCSNILDYISNNGHCEI 111
           LF+  +Y F   +       C N  D    N HC I
Sbjct: 89  LFVATVYTFLEVYVIWSSTACINFFDIYQTNWHCSI 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,745
Number of Sequences: 5004
Number of extensions: 45636
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)