Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E17
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         31   0.21 
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916...    31   0.28 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    28   2.6  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     27   4.5  
07_03_1100 + 23961181-23962599                                         27   4.5  
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    27   4.5  
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    27   6.0  
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742...    27   6.0  
01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982     26   7.9  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 124 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDAD 5
           S + RL AHPG  P +RLI++  D +A LF     A  AD
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPAD 176


>11_04_0090 -
           13391028-13391117,13391369-13391502,13391532-13391659,
           13391684-13391718,13391719-13392159
          Length = 275

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 86  PTAPADHHTVRCSSQALQRARTG 18
           PTAP  HH++ CS     RA TG
Sbjct: 44  PTAPPKHHSLSCSGSQAPRATTG 66


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 2    LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 163
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 139 TVRVDSEST-RLPAHPGVAPLLRLIIILFDVVA 44
           T+R+D+ S  +  A P +AP L +I+ L  VVA
Sbjct: 167 TLRIDNRSEPKFKASPAMAPRLVIILFLLAVVA 199


>07_03_1100 + 23961181-23962599
          Length = 472

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 300 CKKSLRVHCYTLSYANPAVAAPNFIWLVRSTEP 202
           C + L VHC     AN A      +W++ +  P
Sbjct: 74  CMEQLLVHCANAIEANDATLTQQILWVLNNIAP 106


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 159 LTIAPEV-PSELIVRAPACRRTLELPHC 79
           + IA +V P EL+V  PA  R +E+P+C
Sbjct: 132 VVIAHDVDPIELVVWLPALCRKMEIPYC 159


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 159 LTIAPEV-PSELIVRAPACRRTLELPHC 79
           + IA +V P EL+V  PA  R +E+P+C
Sbjct: 147 VVIAHDVDPIELVVWLPALCRKMEVPYC 174


>02_05_1171 +
           34672997-34673122,34673500-34673595,34674126-34674229,
           34674303-34674502,34674643-34674765,34674910-34674998,
           34675579-34675642,34675906-34676049,34676173-34676270,
           34676479-34676724,34676826-34676909,34677011-34677022
          Length = 461

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 205 LR*SH*PNEVGSRYSWIGIRQCVAMDTERLL 297
           +R  H    +G  + W+G+    A DTERL+
Sbjct: 243 MRRVHLRRSLGICHGWLGLDSAAAKDTERLI 273


>01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982
          Length = 406

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 330 LSPKPGM*SVCKKSLRVHCYTLSYANPAVAAP 235
           L P+P M + CKK  ++H + L + +P    P
Sbjct: 235 LQPQPQMMTNCKKKPKLHLHPLLHDDPPPPPP 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,646
Number of Sequences: 37544
Number of extensions: 222665
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)