Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E15
(192 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 0.26
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 1.4
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 1.8
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 24 3.2
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 23 4.2
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 23 5.6
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 23 5.6
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 23 5.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 7.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 23 7.4
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 22 9.8
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 22 9.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 22 9.8
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 22 9.8
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 0.26
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 118 VSLKFVHTLRLESVSYGHSLMQLQIAS 38
VS +F H LRL+ V+ H + +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 1 AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 123
++P+ + STST S+ S + T+PT G Q + G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 119 GLVEVCAHLAPRVGFVWTLLDAVADS 42
G+V A +AP V +W +L+ + DS
Sbjct: 104 GMVLQWASIAPAVDAIWHILNVIDDS 129
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 180 TAPSGRGRGSAVGTPRSPMTRS 115
T PS G GS +P SP++R+
Sbjct: 27 TGPSQSGTGSIPYSPTSPLSRN 48
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 122 PGLVEV---CAHLAPRVGFVWTLLDAVADSFPVLV 27
P +V++ + P++ F WTL+D D LV
Sbjct: 38 PAVVDILTKASQALPQISFSWTLIDQPPDGSLFLV 72
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 12 RVCEINEHGEAICNCIKECPYETDSRRKVCTNFNETWS 125
+ C NE+G C C P+E+ + + ++T+S
Sbjct: 27 KTCVSNENGCINCRCSPSEPHESANVDESVNKLSKTFS 64
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 139 TSQSDDQVSLKFVHTLRLESVSYGH 65
TS SD + + T RLE +GH
Sbjct: 71 TSSSDGTIKIWSALTFRLECTLFGH 95
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 23.0 bits (47), Expect = 5.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 3 SAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 116
S G V HG I CIK+ + + K T FNE
Sbjct: 115 SMGGVIAAVCHGPVILPCIKDSTGFSIVKGKTVTAFNE 152
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 105 NFNETWSSDCEVYR 146
NF +W DCE+ R
Sbjct: 215 NFTNSWDPDCELPR 228
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 22.6 bits (46), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 28 TSTGKLSATASRSVHTKPTLGARCAQTST 114
TST +S++ S SV PT A +Q ST
Sbjct: 130 TSTVDISSSTSSSVINSPTGTAVSSQIST 158
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 101 HKLQRDLVIGLRGVPT 148
H LQ L +GL G+PT
Sbjct: 186 HGLQNPLWVGLLGMPT 201
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Frame = +3
Query: 24 INEHGEAICNCIKECPYETDSRRKVCTNFNETWSSDCEVYRQRCL 158
I+ H + N + CP+ + K+ N + +VY L
Sbjct: 119 ISIHSNIVVNSLTFCPFSYSPQSKIVVLCNTLNFEELDVYDDESL 163
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Frame = -3
Query: 166 SRQRQRCRYTSQSDDQVSLKFVHTLRLESVSYGHSLMQLQIASPCSL 26
+ +RQR R + ++ +++ ++ L+ +SYG + Q+ + + S+
Sbjct: 483 AERRQRFRQSLRAAERILVRSQKMNSLDDMSYGLLVFQVNLMAIMSM 529
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 22.2 bits (45), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 62 GVSIRNRL*AQGVHKLQRDLVIGLRGV 142
G S+ N+ QG+ Q+DLV LR +
Sbjct: 382 GPSMENQALQQGILAEQQDLVAQLRDI 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.114 0.318
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,783
Number of Sequences: 5004
Number of extensions: 12562
Number of successful extensions: 32
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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