Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E13
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   207   1e-54
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   207   1e-54
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   5.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   9.2  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  207 bits (505), Expect = 1e-54
 Identities = 95/183 (51%), Positives = 121/183 (66%)
 Frame = +1

Query: 1   GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 180
           GRMFAPTK WR+WH                          ARGH +E+IPE+PLVV D V
Sbjct: 99  GRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV 158

Query: 181 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 360
           Q   KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIV 218

Query: 361 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFN 540
           +AFRNIPG+E+           APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ 
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYF 278

Query: 541 LPQ 549
           LP+
Sbjct: 279 LPE 281


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  207 bits (505), Expect = 1e-54
 Identities = 95/183 (51%), Positives = 121/183 (66%)
 Frame = +1

Query: 1   GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 180
           GRMFAPTK WR+WH                          ARGH +E+IPE+PLVV D V
Sbjct: 99  GRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV 158

Query: 181 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 360
           Q   KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ 
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIV 218

Query: 361 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFN 540
           +AFRNIPG+E+           APGGHLGRF+IWTKSAF  LD +FGS    ++ KKN+ 
Sbjct: 219 KAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYF 278

Query: 541 LPQ 549
           LP+
Sbjct: 279 LPE 281


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 456 DEPAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 316
           +E A +AA     EVQ+VH E    R  A    ++ VL  ++K + A
Sbjct: 513 NEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 141 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 34
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,604
Number of Sequences: 5004
Number of extensions: 39062
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)