Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E13
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 190 6e-49
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 190 8e-49
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 1.0
06_03_0865 - 25516072-25517007 29 4.1
03_05_0955 + 29168771-29170507 28 5.4
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 5.4
05_01_0146 - 953957-956278,956468-956786,957185-957213 28 7.2
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 9.5
08_02_0190 - 14037655-14038044,14038053-14038436 27 9.5
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 9.5
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 9.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 190 bits (464), Expect = 6e-49
Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 180
GRMFAPTK WR+WH ARGH +E +PELPLV+SD
Sbjct: 103 GRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162
Query: 181 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGL 357
+ I KT QA+ L+++ A++D K S +R GKGKMRNRR + RKGPLI+Y + +
Sbjct: 163 ESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKI 222
Query: 358 TRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNF 537
+AFRN+PG+++ APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK F
Sbjct: 223 VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGF 282
Query: 538 NLPQPKMA 561
LP+PKMA
Sbjct: 283 ILPRPKMA 290
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 190 bits (463), Expect = 8e-49
Identities = 88/188 (46%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 180
GRMFAPTK WRRWH ARGH +E +PE PLVVSD +
Sbjct: 102 GRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSI 161
Query: 181 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGL 357
+ I KT Q++ L++I A++D K S +RAGKGKMRNRR + RKGPLI+Y + +
Sbjct: 162 ESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKV 221
Query: 358 TRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNF 537
+AFRN+PG+++ APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK F
Sbjct: 222 VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGF 281
Query: 538 NLPQPKMA 561
LP+PKMA
Sbjct: 282 VLPRPKMA 289
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 561 NTDLSRLLKSEEIRKVLRAPNKRV 632
N DLSRL+ S+E++ V++ NK V
Sbjct: 290 NADLSRLINSDEVQSVVKPINKEV 313
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 427 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQ 549
APG G GR+++ SA + LDP F SW S+E K F++ +
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEE 711
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 187 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 41
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>03_05_0955 + 29168771-29170507
Length = 578
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 514 PSKEKKNFNLPQPKMATPTSAVC*SPKRSARSCARP 621
P E LPQP ATP + SP + SC+ P
Sbjct: 171 PRPEAAPALLPQPAAATPVACSSPSPSSADASCSAP 206
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 108 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 10
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 507 EDTIEGEEELQPAPAEDGNTDLSRLLKSEEIRKVLRAPNK 626
++T+ ++EL+P ED NT+ SE+ KV +P K
Sbjct: 827 QETVSSKDELEPK--EDTNTEHPNGTVSEDTSKVAMSPTK 864
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 53 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 145
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>08_02_0190 - 14037655-14038044,14038053-14038436
Length = 257
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 498 RLVEDTIEGEEELQPAPAEDGNTDLSRLLKSEE 596
R+ ED G+EE PAE D S L+ SEE
Sbjct: 10 RVEEDDSSGDEENDINPAEWATEDFSGLVVSEE 42
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 77 WPPPWQRPGYRPSFRLEGILLRR 145
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 136 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 249
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,573
Number of Sequences: 37544
Number of extensions: 330954
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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