Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E13
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   190   1e-48
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    32   0.40 
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   2.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    27   8.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  190 bits (462), Expect = 1e-48
 Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
 Frame = +1

Query: 1   GRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKV 180
           G MFAP K +RRWH                         QARGH+++++ E+PLVVSDKV
Sbjct: 98  GHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKV 157

Query: 181 QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 360
           +   KTK+AV+FLRR   W+D+ KVY S+R RAGKGK+RNR+  Q+ GP++IY +D    
Sbjct: 158 ESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECA 217

Query: 361 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKE-KKNF 537
           RAFRNIPG+++           APGGHLGR IIWT+SAF +LD ++G+    S + KK +
Sbjct: 218 RAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGW 277

Query: 538 NLPQPKMA 561
           ++P P MA
Sbjct: 278 SVPLPIMA 285



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 561 NTDLSRLLKSEEIRKVLRAPNKRVV 635
           N+D SR+++SEE+ K +RAP K  V
Sbjct: 286 NSDFSRIIRSEEVVKAIRAPKKNPV 310


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 498 RLVEDTIEGEEELQPAPAEDGNTDLSRLLKSEEIRKVLRAPNKRVVR 638
           +L +D  E EE   P P E  N DL  L K EE+ +V + P  + +R
Sbjct: 189 KLEQDNDEMEEAPIPKPFEVSNEDLQDLGKLEEVEEVEQDPTDKKLR 235


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +1

Query: 124 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 303
           R  + EK+ +L   +S + +EIN  K+ V    RIK   D L++ KS+R    +  +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406

Query: 304 RRVQRK 321
           R  Q +
Sbjct: 407 RCAQEE 412


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 PWHRDAQREQAEPPEAGTRRPSRQ 449
           PW+        EPP  G+RRPS+Q
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQ 825


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -3

Query: 545  GRLKFFFSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRN 366
            G++ FF +         +   L+K+     +++P  P G SFR   ++  S S+  ML  
Sbjct: 1268 GKINFFQTSQSFLGMGQAQLKLTKSQPAPTVSVPTTPSGTSFRPRLVWINSKSLTLMLPE 1327

Query: 365  ARVRPLSL 342
             R +  SL
Sbjct: 1328 GREQRFSL 1335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,758
Number of Sequences: 27780
Number of extensions: 244561
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)