Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E12
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.026
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.74 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.7  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   6.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   6.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   6.9  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    24   9.1  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.026
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 21  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 155
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  CSGRSSFYCLSLCASAFKAD 81
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 150 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDFTNRQKLGAATAGVALD 323
           R+ RD    +  N DGTSGA   + F G  K +   +  S D ++  K  AA   VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALD 498


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 12  YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 113
           +T++FG IVFL  +     +  R    +E VY I
Sbjct: 93  WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 238 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 134
           S+P  G     P VP + S +A   SLRT  ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 238 SLPAKGTLTPAPEVPSE 188
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 395 SCHLSPNPGMCGIPEELIPWPVNIIQCHSSGC 300
           SCH  P    C   + +    +  + CHS GC
Sbjct: 30  SCHFVPR--RCSTCKRINKRSIRCLSCHSVGC 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,947
Number of Sequences: 5004
Number of extensions: 33653
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)