Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E12
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    27   6.8  
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    27   6.8  
05_04_0113 + 18085705-18085833,18086442-18086885                       27   6.8  

>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +3

Query: 96  EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 239
           EP Y   + HY     PEL+   R   DA G + L  D   G    +P  G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209


>09_02_0322 -
           7240125-7241568,7242043-7243253,7245782-7246144,
           7246502-7246522
          Length = 1012

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 238 SLPAKGTLTPAPEVPSELSVRAP 170
           S+P + +L PAP   S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892


>05_04_0113 + 18085705-18085833,18086442-18086885
          Length = 190

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
 Frame = +3

Query: 123 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDF-- 275
           E+    TS+R R    G LT+ ++       G  GAG ++P AG D    +  G      
Sbjct: 30  EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89

Query: 276 TNRQKLGAATAGVALD 323
           ++   + AA+AG+  D
Sbjct: 90  SSLAAMVAASAGIQPD 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,107,829
Number of Sequences: 37544
Number of extensions: 234074
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)