Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E12
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205888-1|AAF22799.1|  777|Homo sapiens AXIN2 protein.                29   7.2  
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot...    29   7.2  
AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.                29   7.2  
AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.     29   7.2  
AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.     29   7.2  

>AF205888-1|AAF22799.1|  777|Homo sapiens AXIN2 protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 22  CSGRSSFYCLSLCASAFKADT*LSANLFTIFNTMRSLNY*QALESAGTR 168
           C G S +YC S C S  KA   + +  F   +T ++     A  S G R
Sbjct: 542 CPGGSEYYCYSKCKSHSKAPETMPSEQFGAQSTKKAYPLESARSSPGER 590


>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
           protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
           +TP P  PS LS   P  SLRTL
Sbjct: 364 VTPTPVTPSSLSTDIPTTSLRTL 386


>AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.
          Length = 957

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
           +TP P  PS LS   P  SLRTL
Sbjct: 364 VTPTPVTPSSLSTDIPTTSLRTL 386


>AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.
          Length = 877

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
           +TP P  PS LS   P  SLRTL
Sbjct: 24  VTPTPVTPSSLSTDIPTTSLRTL 46


>AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
           +TP P  PS LS   P  SLRTL
Sbjct: 24  VTPTPVTPSSLSTDIPTTSLRTL 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,151,172
Number of Sequences: 237096
Number of extensions: 1347861
Number of successful extensions: 4718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4718
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)