Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E08
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          50   8e-06
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     48   3e-05
AK023806-1|BAB14686.1|  177|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens ...    31   3.1  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 49.6 bits (113), Expect = 8e-06
 Identities = 32/127 (25%), Positives = 57/127 (44%)
 Frame = +3

Query: 6   PKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSK 185
           PK+ +++R++LG   F R +IPN A +  PL+ +      +      W  + +++F + K
Sbjct: 403 PKSRKQVRKFLGAAGFCRLWIPNFAVLAKPLYEVTKWGDREP---FEWGSQQQQAFRELK 459

Query: 186 SGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSP 365
             L +A  L  PN      +     +     VL Q       P+ + SK+L+   + + P
Sbjct: 460 EKLMSAPALGLPNLTKPFTLYVSEREKMAVRVLTQTVGPWPRPVAYLSKQLDGVSKGWPP 519

Query: 366 YDRELLA 386
             R L A
Sbjct: 520 CLRALAA 526


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 32/120 (26%), Positives = 52/120 (43%)
 Frame = +3

Query: 6    PKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSK 185
            P N   L  ++G ++ +R  IP+   +  PLH++     LK      W  E E++F   K
Sbjct: 1009 PSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSL-----LKQKPDWQWDQEHEEAFLALK 1063

Query: 186  SGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSP 365
              L +A  L  PN +    +    S  A+ A+L Q+      P+ + SK L   +    P
Sbjct: 1064 RALVSALCLMAPNSQLPFRLEVTVSHVALTAILHQEHSGRKHPIAYTSKPLLPDEESQGP 1123


>AK023806-1|BAB14686.1|  177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13744 fis, clone PLACE3000230. ).
          Length = 177

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +3

Query: 309 VPLGFFSKKLNNAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPIT 467
           +P+GF+S+    A+ +YS  +++L A+Y  ++    M       ++T + PIT
Sbjct: 1   MPVGFWSQLWKGAELRYSLIEKQLAAVYAGLRAHESMTGQAAVIIWTTY-PIT 52


>AK126956-1|BAC86762.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45009 fis, clone BRAWH3012779. ).
          Length = 179

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = +3

Query: 42  MLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANATLLAHP 221
           M+ ++  +IP  A +  PL+ +  G         S+      SF   K  L  A  LA P
Sbjct: 1   MIGYFHLWIPGFAILTKPLYKLTKGNLADPINPKSFP---HSSFHSLKIALETAPTLALP 57

Query: 222 NPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLN 341
           +     ++ T         +L Q    G  P+ F SK+L+
Sbjct: 58  DSSQPFSLHTAKVQGCAVGILTQ--GPGPCPIAFLSKQLD 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,419,060
Number of Sequences: 237096
Number of extensions: 1500074
Number of successful extensions: 2895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)