Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_E08
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 117 6e-27
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 117 6e-27
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 117 6e-27
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 4.4
Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 117 bits (282), Expect = 6e-27
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 7/205 (3%)
Frame = +3
Query: 3 RPKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDS 182
RP N++EL+ +LG++ +YRKFI N A + + L +++S A W E E +F++
Sbjct: 1251 RPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLIS-----AKVAWIWEKEQEIAFQEL 1305
Query: 183 KSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFFSKKLN 341
K + +LA P+ A L I TDAS IGAVL Q+ G P+ F SK L+
Sbjct: 1306 KKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALS 1365
Query: 342 NAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAFKKNSDKCSPRXFRYL 521
A+ +Y D E LA+ +++ F+ ++ TVFTDHKP+ S K + R +R+
Sbjct: 1366 PAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLK--GSPLADRLWRWS 1423
Query: 522 DFISQFTTDIRYIAGDHNHVADALS 596
I +F I Y+AG N VADALS
Sbjct: 1424 IEILEFDVKIVYLAGKANAVADALS 1448
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 117 bits (282), Expect = 6e-27
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 7/205 (3%)
Frame = +3
Query: 3 RPKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDS 182
RP N++EL+ +LG++ +YRKFI N A + + L +++S A W E E +F++
Sbjct: 1154 RPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLIS-----AKVAWIWEKEQEIAFQEL 1208
Query: 183 KSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFFSKKLN 341
K + +LA P+ A L I TDAS IGAVL Q+ G P+ F SK L+
Sbjct: 1209 KKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALS 1268
Query: 342 NAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAFKKNSDKCSPRXFRYL 521
A+ +Y D E LA+ +++ F+ ++ TVFTDHKP+ S K + R +R+
Sbjct: 1269 PAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLK--GSPLADRLWRWS 1326
Query: 522 DFISQFTTDIRYIAGDHNHVADALS 596
I +F I Y+AG N VADALS
Sbjct: 1327 IEILEFDVKIVYLAGKANAVADALS 1351
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 117 bits (282), Expect = 6e-27
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 7/205 (3%)
Frame = +3
Query: 3 RPKNIRELRRYLGMLNFYRKFIPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDS 182
RP N++EL+ +LG++ +YRKFI N A + + L +++S A W E E +F++
Sbjct: 1165 RPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLIS-----AKVAWIWEKEQEIAFQEL 1219
Query: 183 KSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFFSKKLN 341
K + +LA P+ A L I TDAS IGAVL Q+ G P+ F SK L+
Sbjct: 1220 KKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALS 1279
Query: 342 NAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAFKKNSDKCSPRXFRYL 521
A+ +Y D E LA+ +++ F+ ++ TVFTDHKP+ S K + R +R+
Sbjct: 1280 PAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLK--GSPLADRLWRWS 1337
Query: 522 DFISQFTTDIRYIAGDHNHVADALS 596
I +F I Y+AG N VADALS
Sbjct: 1338 IEILEFDVKIVYLAGKANAVADALS 1362
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 144 SWTPELEKSFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDS 302
++ +++++ + ++SG A P P L+ +T S SA G+ + S S
Sbjct: 171 AYAQQVQQAQQSNRSGAAGVNSALQPKPLPPLSSITSISSSAAGSSISAPSTS 223
>Z47070-1|CAA87340.1| 516|Caenorhabditis elegans Hypothetical
protein T09B9.2 protein.
Length = 516
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -2
Query: 499 EHLSEFFLKADVIGL*SVNTVNGLSSTMNLKYLILS*MANNSLS 368
+ L +FF +DV+GL NTVNGL S + + L LS + SL+
Sbjct: 295 QFLPKFF--SDVLGL--SNTVNGLVSALPMAILFLSKCLSASLA 334
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
protein F33H1.4 protein.
Length = 1385
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +3
Query: 66 IPNAAHVQAPLHNILSGQCLKATTLISWTPELEKSFEDSKSGLANATLLAHPNPR-AHLA 242
IPN AH++ H ++ +K+ E ++ ED + A+ A P P AHLA
Sbjct: 209 IPNDAHIEEVRHEVVEKDVVKSVI------ERDRD-EDQEQEHASVADPAGPPPAPAHLA 261
Query: 243 IMTDASDSAIGAVLQQKS--DSGWVPLGFFSKKLNNAQRKYSPYDRE 377
++ + + VP GF S K ++QR +P R+
Sbjct: 262 NKANSRGRPANPIPPHRRPVPKDLVPPGFPSLKRASSQRDPTPIKRK 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,750
Number of Sequences: 27780
Number of extensions: 244684
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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