Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E07
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    30   0.18 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   1.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   1.7  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.2  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   3.0  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   3.9  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   5.2  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   5.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   5.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 375 NVCVYVGNVGSTGSSHSVTENSNDFKSAPYLIHQRSTGI 259
           NVC++      +G +H+++ N+    S+  +I+ RST +
Sbjct: 556 NVCIFAYGQTGSGKTHTMSSNTGMIPSSVRMIYNRSTSL 594


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +1

Query: 55  GFAILRRRLGTIQA------IPEQHCSEE*IEKHAVVPYIGREECQAALRTSHGSENLVI 216
           G ++L   LGT Q       IP++  +EE    +++   +  EE +  +  SHG E +  
Sbjct: 405 GTSLLASSLGTSQEDSVNYDIPDEFANEEDFIPNSLQELLTPEELERKM--SHGDEAVSS 462

Query: 217 NNRQLCARKDSSKGDSGGPLMY 282
           ++      K SS  +SG P  Y
Sbjct: 463 SSASRFMSKVSSNLNSGNPTPY 484


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
 Frame = +1

Query: 130 EKHAVVPYIG-REECQAALRTSHG---SENLVINNRQLCARKDSSKGDS----GGPLMYQ 285
           +KHA +  +G   +C    R ++    +ENL  + +QLC  K    G+S       L+  
Sbjct: 501 QKHARIVIVGDAHQCIYGFRGANACAFNENLYPSTKQLCLTKSFRFGNSVAKYANFLLSL 560

Query: 286 VGSTFEVVGVLSYGMRASGRSNVPNVYTNVYEYIP 390
            G   ++ GV +     S  SN PN  +  + + P
Sbjct: 561 KGENVKLKGVQNDHAYWSSASN-PNNVSGAFRFFP 594


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 301 EVVGVLSYGMRASGRSNVPNVYTNVYEYIPWITSTIE 411
           +V G     +R  G +NV   +TN+++Y P +T+ IE
Sbjct: 138 QVYGFYDECLRKYGSANVWKHFTNLFDYFP-LTALIE 173


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -1

Query: 402 TCYPWYVLI--NVCVYVGNVGSTGS---SHSVTENSNDFKS 295
           TC  W  L+  N  VY  ++G T +   S S+ E  NDFK+
Sbjct: 212 TCADWRPLLQENYHVYEFSIGMTNATLASVSICEEQNDFKA 252


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 235 RTVACYL*QGFRFHAMSSALLDILLYLYTGPRHVFQ 128
           RTV+ YL    ++ A SS L+ + +   +G   VFQ
Sbjct: 349 RTVSRYLSDSPKYRAYSSKLMALFIIFQSGTPFVFQ 384


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 172 DILLYLYTGPRHVFQFTLRNSAVLEWLVLSPTGDGEL 62
           D  L +   P+ VF     N A+ +W+ + P GD  +
Sbjct: 291 DTKLKVIDSPKPVFWVEAFNKAMQKWVCVDPFGDASV 327


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 31  GLYATTVSGFAILR--RRLGTIQAIPEQHCSEE*IE 132
           GL  T++ GF  LR  RR+     IP+ + +   +E
Sbjct: 15  GLITTSIGGFFFLRRFRRISNASTIPKNYLNNSTVE 50


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 390 MDNKYNRSLRNGS*TYKTKLQSDQKLKKL--INS 485
           M NKYN  L+  +  Y + + +D K+K L  INS
Sbjct: 1   MSNKYNNLLKEVAAKYASIILNDAKIKSLTSINS 34


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 68  SVAGWGQYKPFQNSTVPKSELKNMP 142
           SV+G+G    F+NS  P S   N P
Sbjct: 113 SVSGFGSQAVFENSVSPLSNPSNSP 137


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 131 SIHSSEQCCSGMACIVPNRRRRIANPLTVVAYN 33
           S H++E  C+   C     RRR  +PL ++  N
Sbjct: 103 SHHNNESICNNDNCCREIARRRSLSPLLILPLN 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,898
Number of Sequences: 5004
Number of extensions: 46321
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)