Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E05
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   4.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   4.4  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.8  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   5.8  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 124 GGEAGPYTKVQVIKLPRNCAKLITNKTESVLIF 222
           GG+ G   K Q I LP+ CA +     E V  F
Sbjct: 814 GGDRGLSHKHQNIPLPKTCAAIFCGNDELVCFF 846


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 26  PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 115
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 298 VLTKILTRPEQS*LRENKE--PWRCVHHG 378
           + TK+++RP QS +RE +E  P + +H G
Sbjct: 345 ITTKVVSRPSQSDVREPQEQVPSKNLHRG 373


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 470  IEKKFKVGILRPSGSDIDLQCKD 402
            + +KFKVG+  P  +D+D+   D
Sbjct: 1098 LPRKFKVGVAAPPYNDVDVYTND 1120


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +2

Query: 11  KMVRLPTNLSLVSAPLDVR---GSSIQTVKFPEFHRYTPMRVVKLVLIPKFRLLSYPEIA 181
           +++ +P NL+    PL      GSS +T + PEF   TP     L   P F     P   
Sbjct: 144 ELIMVPPNLA--GKPLSANSSFGSSAKTFQLPEFDSVTPS--ASLYKQPSFNSNPAPITT 199

Query: 182 PNL*PTKRKASSSS 223
            +   T + ++SSS
Sbjct: 200 SSATHTSQFSTSSS 213


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 412 WRSI-SDPEGRKIPTLNFFSIFLKACPIYYTRKIVASF 522
           W++I + P  +K  TLN  S+FL  C I +    V  F
Sbjct: 189 WKTIHACPTVKKDSTLNPVSVFLLFCAIAFLAYFVGGF 226


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 462 FLYIFKSMPYLLYT*NCSFILIEFLLLIY 548
           FLY+   +P  LY    +F L+E L L Y
Sbjct: 53  FLYLLLIVPLFLYPEYWAFKLVELLSLFY 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,071
Number of Sequences: 5004
Number of extensions: 57704
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)