Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_E05
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       31   0.48 
04_03_0649 - 18402976-18403220,18403305-18404499                       31   0.63 
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653...    30   1.5  
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465...    29   1.9  
10_08_1055 + 22587122-22587501,22587578-22588097                       28   5.9  
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361...    28   5.9  
12_02_0292 + 16979550-16980662,16983249-16983731                       27   7.8  
05_03_0371 + 13175939-13176688,13177367-13178629                       27   7.8  
05_03_0191 - 9521496-9521921                                           27   7.8  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +1

Query: 4   WIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHAD----EGGEAGPYTKVQVIKL 168
           W+  G P  KLV+GI   GR+W L + D    G P   A     +  + G     ++ + 
Sbjct: 267 WLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAAGTKQRKSNQIGVIAYAEIEEY 326

Query: 169 PRNCAKLITNKTESV 213
            ++ +  +T+  +SV
Sbjct: 327 LKSQSVFVTHDNQSV 341


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 4   WIQNGAPTHKLVLGISTTGRTWKLDSDSEISGV 102
           W+  G P  K+V+GI   GR+W L + +  SGV
Sbjct: 268 WLDAGVPASKVVMGIPLYGRSWFLRNKAN-SGV 299


>05_04_0141 -
           18364065-18364176,18364722-18364948,18365183-18365390,
           18365497-18365706,18366078-18366180,18366214-18366325,
           18367061-18367204,18367835-18367936,18368081-18368186,
           18368301-18368335
          Length = 452

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 485 HAFKNIEKKFKVGILRPSGSDID-LQCKDHENHPWKG 378
           H F   E KFK+  +  SG  ID L+ K+  N P+KG
Sbjct: 371 HTFPTFEVKFKIMGVALSGLQIDKLEVKNTPNAPYKG 407


>06_01_0641 -
           4652380-4653771,4653850-4654521,4654536-4654707,
           4655515-4655690
          Length = 803

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +2

Query: 170 PEIAPNL*PTKRKASSSS*GHDPTTFWDLCLRLPDDNGEVASGFLRRS*HGRNKASYVKT 349
           PE A  + PT +K SSSS GHD        L  P  +  + S F R    G  + SY   
Sbjct: 213 PEPATAMAPTPQKWSSSSRGHDH-------LETPKVDSYIRSPFARGPMGGATRKSYADL 265

Query: 350 KNLGGVSIMDLS 385
            +L      D+S
Sbjct: 266 SHLSMPDSADIS 277


>10_08_1055 + 22587122-22587501,22587578-22588097
          Length = 299

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 404 DHENHPWKGP*WTHRQGSLFSRN*LCSGRVRIFVRTQKPLHHYHQEG 264
           DH NHPW     THR     S     S    I ++   P+HH  Q G
Sbjct: 206 DH-NHPWP----THRNALAGSTRPSSSNSSNIRLQDSTPVHHQSQTG 247


>09_04_0634 - 19132916-19134033,19134716-19135915,19136002-19136106,
            19136273-19136315,19137622-19137740,19138074-19138172,
            19138264-19138480
          Length = 966

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 149  KFRLLSYPEIAPNL*PTKRKASSSS*GHDPTTFWDLCLRLPDDNGEVAS 295
            K R+LS+         +  K+ S   G D   FW    RLP++N E  S
Sbjct: 901  KERVLSFRRRVSKDDSSSAKSGSPKPGADDNKFWSSPARLPENNAEKKS 949


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 27  PQTCPWYQHHWTYVEARFR 83
           P+   W QHHWT    R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523


>05_03_0371 + 13175939-13176688,13177367-13178629
          Length = 670

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 79  SDSEISGVPPIHADEGGEAGPYTKVQVIKLPRNCAKL 189
           S S +  +  +H D+ G+A P T V + + P+    L
Sbjct: 595 SSSLVDRIEAVHLDKNGQASPDTSVVIRRTPKKHGSL 631


>05_03_0191 - 9521496-9521921
          Length = 141

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 15  WCAYPQTCPWYQHHWTYVEARFR 83
           W   P+   W++ HWT   AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,362
Number of Sequences: 37544
Number of extensions: 393464
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)